Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00018 ATGGCCTATTTCAAGCAAGTTGAAGCTGGTCTATGTTATGTGTCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAAATGCAATAGGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAGGAAGATAGCAGGAATGCTGATGATCCTTACAGCTCAAAATTTGGTCGGACATCAACTGCTAGTATAATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGAAAGGACTCAAATTTCAAGCTAGAGCCAAATATGCAGGCAAGTGCAAACTACCCTTCAGTTATAAGCTCCGCTGCACATTTATCATCAGAGGAACAGCCAGCTGGTTTTCAGGTAAATCATGAAATTGAAGTGGTTAAAGATCCTACCATGCCCTCAGTCTTGTTTGATGGAGTAGCCAAAGATAGAACTCATAAAAACTTAGGTATTAGCAGCGTAAATGATAGTTGCTCCTCTTCAAAGCCAGATATGGAAACTGAAATGGATGAAAATGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGATTCCACTAAGGAAGAAGTGACGGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAGAGAATATGCTCCTGAAGATAATGTGGCTTCTGGGGAAGATGCCGTCATCACTGGTAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGATCATTTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCATGCTACAATCCACGTTCGAAAAAACTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAGAAAATTCTCAAGGAACCAAATATTCACAATGAGTTGGGCAAATGTAGAGCTACCTCAGTTAAGGCTGAATCAAATTCCATACTATTGATGTTGAGAAACACTGGGCCATATACAACTAGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGACTGGTCAGGTCCGATAGAAAGTGATGAAGATGCCCTTCCTGAACCATTGGAAATTAATCCTTCAGACTTCAATAGACTGCTGGAAGAGAATACGAGAAGTCTTTCTAAGCTCAGTGCCATTGGTAATTGGATTCAATGTCAGGCAGTTATAGATAGATCCAATGGAACTATATGTGGAAAATGGCGCCGGGCACCTTTTTTTGAAGTTCAAACTGATGTCTGGGAGTGCTTTTGTGCTATCCACTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTTTTGAAGCAACTGAAGTATGTGGAAGTGCTTCGGCCGCGAGTTGCTGCTAAACGGAAAAAATCAGATTGCACACAAAACAATGATTGA 1428 0.4104 MAYFKQVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNRYPLDWCRKAEPVEEDSRNADDPYSSKFGRTSTASIMTENTTPKPKMVYRRKKLRKDSNFKLEPNMQASANYPSVISSAAHLSSEEQPAGFQVNHEIEVVKDPTMPSVLFDGVAKDRTHKNLGISSVNDSCSSSKPDMETEMDENGECSSSSVIVMDSTKEEVTEKDFCINILRSHGLLREYAPEDNVASGEDAVITGNSCCSRSCKICDHLDSSLNMLLCDHCEDAYHPSCYNPRSKKLPIDEWFCHSCLKKRQKILKEPNIHNELGKCRATSVKAESNSILLMLRNTGPYTTSVRVGKGFQAEVPDWSGPIESDEDALPEPLEINPSDFNRLLEENTRSLSKLSAIGNWIQCQAVIDRSNGTICGKWRRAPFFEVQTDVWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRVAAKRKKSDCTQNND 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00018 475 SMART PHD_3 244 290 IPR001965 -
Spst9g00018 475 MobiDBLite consensus disorder prediction 164 189 - -
Spst9g00018 475 ProSitePatterns Zinc finger PHD-type signature. 245 289 IPR019786 -
Spst9g00018 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 296 IPR013083 -
Spst9g00018 475 Pfam PHD-finger 245 291 IPR019787 -
Spst9g00018 475 ProSiteProfiles Zinc finger CW-type profile. 384 444 IPR011124 GO:0008270
Spst9g00018 475 FunFam uncharacterized protein LOC106759733 isoform X4 388 453 - -
Spst9g00018 475 SUPERFAMILY FYVE/PHD zinc finger 236 294 IPR011011 -
Spst9g00018 475 ProSiteProfiles Zinc finger PHD-type profile. 242 292 IPR019787 -
Spst9g00018 475 Pfam ELM2 domain 335 449 IPR000949 -
Spst9g00018 475 Gene3D - 388 453 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst9g00018 ELM2 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00018 - - gmx:100813057 816.609