Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00006 ATGGAATATGGTGGCTTAGTGCACAGTGGTGCATATGGGAGCTTCCCAGATATTTTTGCCCCAGAAACGGATTTTATGGATGAGCTATTTGTAGAAGGATGTTGGGTGGAAACGAAGGTTGGATGTGGAGGGTCGTACCTTAACTGTGGTACGGAGCCTTCAAAGTCAAACAGGAGCATGGAGGCAAATGAGGCGCAACTAATATTTGAGGAAGAATCAGAGGCGGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGCGAATCCGGGGCCATCTTCCTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGATACTTGAAAGAATACACCAAGAACTCCAATGTGGCGATTCAGGTATGGGTGCCCGCACGGAGAGGATGTGCAGTAGGGAGTCATCAGGATTACCCATACACCCTTGACTATGCTAATGTCACTAACAATAGTAATAACAGTAACAACGGGGATGCAGCAAGAGCTTTTCAGTTTCAGGAGGAGTGGCTTCCTCATCACTGGACTCCCAACATTCGCTTCCTCAGAAGTCACGACTATCCGCGCGTTCAGCAGTACGATCTACGTCCTGGATCTCTGGCACTTCCCGTCTTTCAGAGAGGCACTGGAATTTGTCTCGGTGTTCTCGAGATTCTCGAGCCCAACAATGTTAACCCGGACCTTCACAACCTTCAGGGTGTTGATTTTAGGAGTTGTTCTCACCAGAGCTTCATTCCACCAGCCGTGACCGTGAAGGGTTTTGACGAGTTATACCAAGTTGCATTAAATGAGATAATAGAAGTTTTGACGTGTGTGTGCAAGGCGCATAACTTGCCCTTAGCTTTGACATGGGCTCCGTGCATCCAACAAGGAAGGAGTGGATGCGGGCATTCAAACGATGAGAATTATGTGTCGACTGTGGATCCAGCAAGCTTTGTGGCAGATGTAGAGGTATTGGGATTCCTGGAAGCGTGCTCTGAGTACCACCTTCTTGGGGGTCAAGGAGTGGTTGGGACAGCTTTCACAACCGCCAAACCTTGCTTTGCAAATGACATAACTGCCTTCACCAAGGCCGAATATCCTCTGGCACACCATGCAAACATGTTCGGCTTGCATTCTGCTGTGGCCATTCCTCTGCGGAGTGTCTCCGCTGATTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACAGCCAAGAGCAGAAACAGATGCTCAACTCATTGTCTATGCTAGTGCAGAAAGCTTGCCGGAGTTTGCATGTTGTAATGGATAAGGAGGATGAGGAGGAGGAATTGGTGGTACACCATCATCATCATCATCATCATCATCATCGACATGATGATAAAGAAATGGAATCGTCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTGTCGGTGTCCCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAATGAGCAGATATTCTCAGAACTGGAAGGAACAGGCAGTGTTGGTGTTGGTGGCCGCCGGGGTGGCAGGAAATCTGGCGACAAGAGGCGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCCGGGAGCCTAAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACCCTAAAAAGAATATGCAGACAACATGGGATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGTCACTCCTTAAGGAAACTTCAACTAGTGATCGACTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGCTCTGCCAATGGTGTTTCGGAATCATCCAAGATCAGCAATGATAATTCTAAGTTTTATTCGGAAAATGGGTTGTTTAGTAACCAAGGAGTTACCACTACTACTTCCACTTCTCCTTTCAAATCCCCAACGTCGTCTTGCAGTCAGACTTGTAACCCCACTTCAAACCAATCAACCAATGTCATCAACAACAGCAATAATAATAATAATAATAACAACAATGCTGATATTATTCTGATGTCAGAGAATGAACCACTAATTGGTGCATCACTCCAAGTTCAAGGGGAAGCAAAGCATATCACCCACCACCCTCCAATTCCCATTCCCATTCCCATTCCCATTCAAAGCCTGGATGTTCTACCTCCCTTGCCATTCCCATTCACGGGCACGGGTACTTTTAGAGTCAAAGCTACTTTTGGAGATGAAAAAATCCGTTTTAGCTTGCAATCAAATTGGGGATTCGGCGATTTGCAGATGGAGATTGCAAGACGTTTCAATCTGAACGAGATTAGCAATATTCAGCTCAAGTATTTGGACGATGCTCAAGAGTGGGTTCTCTTAACTTGCGATGCTGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAATTAGACTCTTCCTCTTTCAAGCTTCGCCACTGACTCACGCAACCAATGCATTTGGCGGCACCAGCCCCACCTAA 2517 0.468 MEYGGLVHSGAYGSFPDIFAPETDFMDELFVEGCWVETKVGCGGSYLNCGTEPSKSNRSMEANEAQLIFEEESEAESLMVGKRWWIGPRANPGPSSSVKERLVVAVGYLKEYTKNSNVAIQVWVPARRGCAVGSHQDYPYTLDYANVTNNSNNSNNGDAARAFQFQEEWLPHHWTPNIRFLRSHDYPRVQQYDLRPGSLALPVFQRGTGICLGVLEILEPNNVNPDLHNLQGVDFRSCSHQSFIPPAVTVKGFDELYQVALNEIIEVLTCVCKAHNLPLALTWAPCIQQGRSGCGHSNDENYVSTVDPASFVADVEVLGFLEACSEYHLLGGQGVVGTAFTTAKPCFANDITAFTKAEYPLAHHANMFGLHSAVAIPLRSVSADFVLEFFLPKDCHDSQEQKQMLNSLSMLVQKACRSLHVVMDKEDEEEELVVHHHHHHHHHHRHDDKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQIFSELEGTGSVGVGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESSKISNDNSKFYSENGLFSNQGVTTTTSTSPFKSPTSSCSQTCNPTSNQSTNVINNSNNNNNNNNNADIILMSENEPLIGASLQVQGEAKHITHHPPIPIPIPIPIQSLDVLPPLPFPFTGTGTFRVKATFGDEKIRFSLQSNWGFGDLQMEIARRFNLNEISNIQLKYLDDAQEWVLLTCDADLEECKDINRSSQSRTIRLFLFQASPLTHATNAFGGTSPT 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00006 838 MobiDBLite consensus disorder prediction 501 523 - -
Spst9g00006 838 Pfam RWP-RK domain 527 574 IPR003035 -
Spst9g00006 838 ProSiteProfiles RWP-RK domain profile. 513 594 IPR003035 -
Spst9g00006 838 CDD PB1_NLP 740 821 IPR034891 -
Spst9g00006 838 PANTHER PROTEIN NLP8 71 822 IPR045012 GO:0003700
Spst9g00006 838 SUPERFAMILY CAD & PB1 domains 735 824 - -
Spst9g00006 838 ProSiteProfiles PB1 domain profile. 739 822 IPR000270 GO:0005515
Spst9g00006 838 SMART PB1_new 739 822 IPR000270 GO:0005515
Spst9g00006 838 MobiDBLite consensus disorder prediction 639 659 - -
Spst9g00006 838 Gene3D - 740 822 - -
Spst9g00006 838 Pfam PB1 domain 739 821 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00006 Spst-Chr9 69283 72376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00006 53 823 NLP Transcription Factor Family AT4G35270 44.496 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst9g00006 PB1 1.4e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00006 - - pvu:PHAVU_009G115800g 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00006 9 69283 72376 Spst9g00006 9 69283 72376 ECH