Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02396 ATGCACATCTCTGTGAACCCAACACTGAAGTCAACGCAAACTCATGTTTGTTCTAACTTGGGACGTATGAATGTGAAAGCATTTGCTGTAAAGATAAACTTCTTAGGGCATATGCTTTGGCAACAAATTAAACAAAACCCTTCTTCGAATTTAAATAAAAAGAAGGTAGAGCTTGATTCCTCCACTTGCAGGGGTAAAAGAAGGTCTAAGAATGATGAAGTCACTTTTCTAGTTGCTCAGATGAAAGCTGTGACTTGTGGTTCGAAGAAACTTGCACTAAACCACAAAAAGACCTGCATTACTTTTGACTTGGACTTGCATTGTGAAGGGTTAATTGGTCTAACAAAAAGTCTTGTTGCTCAATCAACATTAGCATCTCTTGAAAGTCTTCCCCAAGTCATCCCTAGGTGTACCCCACTCATGGGTTGTGGCAAAATGACAGACAACAATCCAAGACCACCACCTGACACACCTGACAGTGATGATTTCACCAACCAGTGGCCTTTTGAGGTCTCTGAGTACTTGAGATTCGAAGATAACCAATGGATGCATGATGATCTTGAGTCTTCTGCTTCTGAGAATGTCTCAAACCAGATTCATCAAGCCAGTAATGTAGGTGAGTTTGGAGGCGGTGGAAGATACTTTGAGGGATCTTCTAGCAGAGATGGTAGCAGTGGACGTGTGAATAGGGAAGTTGTAAGAGAGAGAGTTGCATTCAAAACAATGTCAGAGATTGAAGTACTAGAAGATGGGTACAGATGGAGAAAGTATGGAAAGAAAATGGTGAAGAACAGCCCCAATCCAAGGAATTACTATAGGTGTTCAGTGGATGGATGCTCTGTGAAGAAGAGAGTGGAGAGAGATAAGGATGACCCTCGGTATGTAATAACAACCTACGAAGGAAACCACACTCACCCGAGTTCTTCCTAG 930 0.4194 MHISVNPTLKSTQTHVCSNLGRMNVKAFAVKINFLGHMLWQQIKQNPSSNLNKKKVELDSSTCRGKRRSKNDEVTFLVAQMKAVTCGSKKLALNHKKTCITFDLDLHCEGLIGLTKSLVAQSTLASLESLPQVIPRCTPLMGCGKMTDNNPRPPPDTPDSDDFTNQWPFEVSEYLRFEDNQWMHDDLESSASENVSNQIHQASNVGEFGGGGRYFEGSSSRDGSSGRVNREVVRERVAFKTMSEIEVLEDGYRWRKYGKKMVKNSPNPRNYYRCSVDGCSVKKRVERDKDDPRYVITTYEGNHTHPSSS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02396 309 Pfam WRKY DNA -binding domain 249 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g02396 309 SMART WRKY_cls 248 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g02396 309 ProSiteProfiles WRKY domain profile. 243 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g02396 309 FunFam WRKY transcription factor 57 234 308 - -
Spst8g02396 309 SUPERFAMILY WRKY DNA-binding domain 240 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g02396 309 Gene3D WRKY domain 235 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g02396 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 148 307 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02396 Spst-Chr8 35440870 35443508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02396 180 307 WRKY Transcription Factor Family AT5G26170 51.351 4.29e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g02396 WRKY 7.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02396 - - gmx:100796836 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02396 8 35440870 35443508 Spst8g02396 8 35440870 35443508 ECH