Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02366 ATGGAGGGGATCAAAGTGAAGGAGGAAGAAACAGTGACATGTGGTGGTGGTGGTTCATCACCATCTTCATCTTCAAGCTTTTCCCCACTACCTATGGAAGGGTTGCACGAGGTGGGTCCCTCACCATTTTTGACAAAGATCTTTGACATGGTGGAAGATCCTTCCACAGACTCTATTGTGTCATGGAGCACTACTTGCAATAGCTTTGTTGTGTGGGATTCTTACAAGTTTTCGACTAATATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGTAAGTACTAAGGACTTTGATGTTGTATTATTTTGTGTACGAGTTGTATTAGGTCATTATTTTGTTCATGATCAAGTTTTCATTCATTTTGATTGGTTTAATGCTCATTTTGATCAGGGGTTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCAAATGAAGGATTTTTGGCAGGACAAAGACACTTACTGAAGACCATAAAGAGAAGAAGAAAAGTTTCGCAGAGCATGCAAGGCAGAGGAGGAGATGAAGCATGCGTTGAGGTGGGGAAGTTTGAACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGATAGGAACATTTTGATGACAGAAATTGTGAGGTTAAGGCATCAACAGCTGAATTCAAGAGACCAATTGAGTGCCTTAGATGCCAGATTGCAAGCCACGGAGAAGAAACAGAAGAAGATGATGACATTTCTTGCCAAAGCACTGACTAATCCATCTTTCATGCAACAATTAGTCCATAAGACCCCCCAGAGCATAGAAATGTTGGATGTTGAAATCAATAGGAAAAGGAGACTAATTGCTAGCCAAAGTGTGGAGAACTTACAACAAGATGATCCTGTAACATTGATGGAGCCTGAGATGGACACTTATTTCTCACCAGCTTTTGATAGTGAACTTAGTAATGAGATCAAAGAGCACGCATTAGGTTCAGATATAACAGCTGGTGAATGTGATATTATTGGTGACACAATATTGGAGGACTTGCTCGTCAAAGACTTGGTTACGGGGGATCCAAAGGATGAAGTCTTCATTGGTGATTGTTCACAAATTGATGTGGCAGAGGAGGATTTGGTAGCAAACCCTGGTGATTGGAGTGACCAATTTCAGGACCTTGTGGATCATATGGACTATTAG 1185 0.411 MEGIKVKEEETVTCGGGGSSPSSSSSFSPLPMEGLHEVGPSPFLTKIFDMVEDPSTDSIVSWSTTCNSFVVWDSYKFSTNILPRYFKHNNFSSFIRQLNTYVSTKDFDVVLFCVRVVLGHYFVHDQVFIHFDWFNAHFDQGFRKVDPDRWEFANEGFLAGQRHLLKTIKRRRKVSQSMQGRGGDEACVEVGKFELEGELERLKRDRNILMTEIVRLRHQQLNSRDQLSALDARLQATEKKQKKMMTFLAKALTNPSFMQQLVHKTPQSIEMLDVEINRKRRLIASQSVENLQQDDPVTLMEPEMDTYFSPAFDSELSNEIKEHALGSDITAGECDIIGDTILEDLLVKDLVTGDPKDEVFIGDCSQIDVAEEDLVANPGDWSDQFQDLVDHMDY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02366 394 MobiDBLite consensus disorder prediction 15 29 - -
Spst8g02366 394 SMART hsfneu3 39 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02366 394 Pfam HSF-type DNA-binding 43 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02366 394 SUPERFAMILY "Winged helix" DNA-binding domain 39 171 IPR036390 -
Spst8g02366 394 Coils Coil 192 219 - -
Spst8g02366 394 MobiDBLite consensus disorder prediction 1 29 - -
Spst8g02366 394 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02366 394 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02366 394 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst8g02366 394 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 287 IPR027725 -
Spst8g02366 394 Gene3D - 36 172 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02366 Spst-Chr8 34873774 34876359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02366 29 394 HSF AT2G26150 44.086 1.27e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst8g02366 HSF_DNA-bind 2.7e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02366 K09419 - gmx:100820298 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02366 8 34873774 34876359 Spst9g00608 9 5357808 5359165 PCT