Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02358 ATGTCCAATTTGACGTCTGCATCGAGTGAATTAAGTGCTTCTTCAGGAATCAGAAATGGCAACGGTTTTTTCCATGCTCGCCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCGGGCCACCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCACAGACCCTATTGGCAACAAACAGGTTCGTTTGTGAGATTTGTCAGAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGCCACAATTTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTGTGTCCAGAGCCAACATGCGTTCACCATGACCCTTCGAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCTAAACGCTATGCAGTTCAATCAGATTGGAAAGCCCACTCCAAAATCTGTGGCACCAGAGAATATAAATGTGACTGTGGAACCCTTTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAAGAAAGTGGTAGAGCAGTGAACCCTCAATCTCTACTATCATCTCAATCCCAATTTCGAAGCCATGGCCTTCAACTTCAAGCACCATCATTACTAGTACTCAAAAGAGAACAAGAGTTCAACCTCTTAGGTCAAGAAATTCCATCATGGTTAACTTCTCCTACAGTGTTAGAAGAATCAATGCTAAGAACAACCTTCGACTTCTCCCCACCACAGTTATTCCCCACACATGTCAACCACTCCTTATTCCACCATGATCAAAACCCTAACCCTACTTCTACCACAACAGCTTCAACAACCACTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACCACTTCTCCTCACATGTCAGCTACAGCTTTGTTGCAAAAAGCCTCACAAATAGGGGTAGCAGTGAGTGCAGCACCTTCACAAGAGATGATAGTGAGACCCCACTTGTTGCTGCAGCAGGTTCACGTGCCTGAATGTACAACAACTACTACTACTACTACTACAACAGGGCATAATAATATGGCTTCTTCTTCAGCCGTTTCTGGAATGGTTATGGCTATGCCTTCACGTGAAGAAATAGGGACTCAGGGATTTGCTCGTGGCTTGGCATCTTGA 1206 0.4453 MSNLTSASSELSASSGIRNGNGFFHARQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPQTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPQSLLSSQSQFRSHGLQLQAPSLLVLKREQEFNLLGQEIPSWLTSPTVLEESMLRTTFDFSPPQLFPTHVNHSLFHHDQNPNPTSTTTASTTTFLPSLSSFHYSTTSPHMSATALLQKASQIGVAVSAAPSQEMIVRPHLLLQQVHVPECTTTTTTTTTTGHNNMASSSAVSGMVMAMPSREEIGTQGFARGLAS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02358 401 SMART c2h2final6 70 92 IPR013087 -
Spst8g02358 401 SMART c2h2final6 111 141 IPR013087 -
Spst8g02358 401 SMART c2h2final6 146 166 IPR013087 -
Spst8g02358 401 FunFam protein indeterminate-domain 12-like 49 117 - -
Spst8g02358 401 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Spst8g02358 401 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 368 IPR031140 -
Spst8g02358 401 MobiDBLite consensus disorder prediction 31 54 - -
Spst8g02358 401 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Spst8g02358 401 Gene3D Classic Zinc Finger 51 117 - -
Spst8g02358 401 Gene3D Classic Zinc Finger 124 202 - -
Spst8g02358 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Spst8g02358 401 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02358 Spst-Chr8 34757713 34760785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02358 31 335 IDZ Gene Family AT3G50700 55.287 1.38e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g02358 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02358 K25870 - gmx:100783557 558.14