Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02343 ATGACTCCTTGTTCCCTCAACCCACCACCCATACAAAGTCAAACCCAAATCTTCAACATATTTGATCCAACCCAAACCATACAAATTGCAGGCTTCAGAGAAAATTATCAACAGGATGAGAAGATGGTAGTGCATGGTGGATCATCAAGCAATAATCTCAATCCACCTGAGCCAGTTACGGATGATCCAATTAGCAGCGCAACTGAGGGTAACTTAGCCTCGTACAAAGTGGAGGAGGAAGACATAGAAAATGGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGATAGTGAAAAAAATGATGAGAGGGAGTATGAGTCCAAGCACTGACAAAGCATTGAATCCACCAGGGCAAGAAAGCAGGTGCAGCCAAAGAAGCCCTCGTAACAACAGCAATAGCACCACTAGGGTTTGTTCGGATTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCACTTTGCAATGCCTGTGGCATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTGCAAATGGTTTGGTCAGTCCCATGAACTCAGTATTTGCAAAGACCAGAGTGCACAACAAGGAAAAGAAGTCTCGTGCAAACCACTATGCACAGTGCAAGAGCAAGTACAAGTCCACTACTAGTACTGCAGGATCATCCGAGGGGTTGAGGAAGATTGAATATTTGAAGGACTTTGCCATAAGTTTGAGGAGTAACTCTTCTTTCCAACAGGTGTTTCCACGGGATGAAGTTGCTGAGGCAGCAATGCTTCTGATGGAGTTATCTTGTGGTCTTGTCCACTTATAA 822 0.4538 MTPCSLNPPPIQSQTQIFNIFDPTQTIQIAGFRENYQQDEKMVVHGGSSSNNLNPPEPVTDDPISSATEGNLASYKVEEEDIENGHGSGKWMSSKMRIVKKMMRGSMSPSTDKALNPPGQESRCSQRSPRNNSNSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGLVSPMNSVFAKTRVHNKEKKSRANHYAQCKSKYKSTTSTAGSSEGLRKIEYLKDFAISLRSNSSFQQVFPRDEVAEAAMLLMELSCGLVHL 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02343 273 Pfam GATA zinc finger 140 173 IPR000679 GO:0006355|GO:0043565
Spst8g02343 273 ProSitePatterns GATA-type zinc finger domain. 140 165 IPR000679 GO:0006355|GO:0043565
Spst8g02343 273 ProSiteProfiles GATA-type zinc finger domain profile. 134 170 IPR000679 GO:0006355|GO:0043565
Spst8g02343 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 174 - -
Spst8g02343 273 Gene3D - 134 220 IPR013088 GO:0006355|GO:0008270
Spst8g02343 273 MobiDBLite consensus disorder prediction 109 153 - -
Spst8g02343 273 MobiDBLite consensus disorder prediction 44 63 - -
Spst8g02343 273 CDD ZnF_GATA 139 176 IPR000679 GO:0006355|GO:0043565
Spst8g02343 273 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 8 272 - -
Spst8g02343 273 MobiDBLite consensus disorder prediction 103 157 - -
Spst8g02343 273 SMART GATA_3 134 185 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02343 Spst-Chr8 34558011 34559779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02343 85 272 C2C2-Gata Transcription Factor Family AT4G26150 37.089 1.76e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst8g02343 GATA 2.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02343 - - vra:106764137 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02343 8 34558011 34559779 Spst9g00601 9 5303355 5307156 PCT