Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02316 ATGGGGTTCGAAACACTGCAGGCCCCGATGGACATCAAGCGTGGGCTGCAAGAGTCCAGGCGAGATCGTGCGGTGTTCGCCAACTGTCGTTTTGAGGGCTACCAAGACACTCTATACGTCCAAGCCCACAAACAGTTCTACAGGAGCTGCATCGTTAGTGGCACAATTGACTTCATCTTTGGTGATGCAGCTGTGGTGTTCCGGAACTGCATCATGGTTGTGAGGAAGCCAAATGACAACCGACGAGAACATGGACAAGATCGGGAGCTACCTTGGAAGGCCATGGAAGGAGTTCTCAAGAACCATTGTGATGGAATCAGAAATAGGTGA 330 0.5121 MGFETLQAPMDIKRGLQESRRDRAVFANCRFEGYQDTLYVQAHKQFYRSCIVSGTIDFIFGDAAVVFRNCIMVVRKPNDNRREHGQDRELPWKAMEGVLKNHCDGIRNR 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02316 109 Pfam Pectinesterase 20 82 IPR000070 GO:0030599|GO:0042545
Spst8g02316 109 Gene3D - 16 88 IPR012334 -
Spst8g02316 109 SUPERFAMILY Pectin lyase-like 16 81 IPR011050 -
Spst8g02316 109 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Spst8g02316 109 PANTHER PECTINESTERASE 19 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02316 Spst-Chr8 34117881 34118306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02316 1 81 Carbohydrate Esterase AT3G05610 50.617 8.64e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02316 - - gmx:100784679 120.168