Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02287 ATGTGCACGTGGCATTCGCAGAGGCCAAGGTTGGTATACACATGTAAAAATGTTATCTCACTTCTACTCCCCCATTCATATATCTTTGCTTTTCGCAACTCCCTTACCAGCCAGCCCCCCTTTCTCTCCTTCACGACAACCTCGCTCCGAACCTTACATCACACCCCTACCCGAACCTCCGCTTCGGATCCTAATCCCTCCCCCATGGGAACCGAGGGTTACACTTACCTGGGACGCAATTTCAGCCAACTCAGCATCGACGATGCTTCCTCTTCCTCCGCCTTCAGCGACTGCAATAGTGACAGATCTGGCGAATTCGCCACCGCTTCTTCGCAAACACGCCGCTTCCTCATCACCTGCGCCACTGAAAACTCCGACGACTTGATCCGTCAACTCGTCGCCGATCTCCACTCTGCCTCCCTCGACGCTCAGAAACAAGCCGCCATGGAAATCCGATTGCTCGCCAAGAACAAGCCAGAGAATCGCCTCACAATCGCCAAAGCCGGTGCAATCAAACCGCTGATTGCTCTCATTTCCTCGCCGGACCTCCAGCTCCAAGAGTACGGCGTTACAGCGATTTTGAATCTCTCGCTCTGCGACGAGAACAAGGAGGTGATTGCCTCCGCCGGCGCTATTAAGCCGTTGGTTCGCGCGCTCAGCACGGGAACCGCGACGGCGAAGGAGAACGCGGCGTGCGCGCTGCTGCGGCTGTCACAGGTGGAGGAGAACAAGGCTGCGATCGGGCGGTCCGGCGCGATTCCTCCGCTGGTGAACCTTCTAGGGAGCGGCGGGTTCCGCGCGAAGAAGGACGCGTCGACGGCGCTGTACTCGCTGTGCACAGTGAAGGAGAACAAGCTGAGGGCGGTGAAGGCGGGGATTATGAAGGTGCTGGTGGAGCTTATGGCGGACTTCGAGTCGAACATGGTGGACAAGTCGGCGTACGTGGTGAGCGTGCTGGTGGCGGTGCCTGAGGCGAGGGCGGCGTTGGTGGAAGAAGGCGGCGTGCCAGTGCTGGTAGAGATTGTTGAGGTTGGAACGCAGAGACAGAAGGAAATCTCCGTGGTTATTCTGTTGCAGGTGTGCGAGGATAGCGTGACGTACCGCACTATGGTGGCTCGCGAAGGTGCGATTCCTCCTTTGGTGGCTTTGTCTCAGTCCGGCACCAATCGCGCGAAGCAAAAGGCGGAGAAACTAATTGAGCTTCTTCGGCAACCAAGATCCAGCAACGGCGGTGGTCGTACGACAGAAGTGGCGGCTTAA 1260 0.5754 MCTWHSQRPRLVYTCKNVISLLLPHSYIFAFRNSLTSQPPFLSFTTTSLRTLHHTPTRTSASDPNPSPMGTEGYTYLGRNFSQLSIDDASSSSAFSDCNSDRSGEFATASSQTRRFLITCATENSDDLIRQLVADLHSASLDAQKQAAMEIRLLAKNKPENRLTIAKAGAIKPLIALISSPDLQLQEYGVTAILNLSLCDENKEVIASAGAIKPLVRALSTGTATAKENAACALLRLSQVEENKAAIGRSGAIPPLVNLLGSGGFRAKKDASTALYSLCTVKENKLRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVAVPEARAALVEEGGVPVLVEIVEVGTQRQKEISVVILLQVCEDSVTYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIELLRQPRSSNGGGRTTEVAA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02287 419 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 251 293 IPR000225 GO:0005515
Spst8g02287 419 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 210 252 IPR000225 GO:0005515
Spst8g02287 419 SMART arm_5 364 404 IPR000225 GO:0005515
Spst8g02287 419 SMART arm_5 199 239 IPR000225 GO:0005515
Spst8g02287 419 SMART arm_5 240 280 IPR000225 GO:0005515
Spst8g02287 419 SMART arm_5 322 362 IPR000225 GO:0005515
Spst8g02287 419 SMART arm_5 158 198 IPR000225 GO:0005515
Spst8g02287 419 SMART arm_5 281 321 IPR000225 GO:0005515
Spst8g02287 419 PANTHER U BOX DOMAIN-CONTAINING 101 403 - -
Spst8g02287 419 SUPERFAMILY ARM repeat 126 399 IPR016024 -
Spst8g02287 419 Gene3D - 108 413 IPR011989 -
Spst8g02287 419 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 169 211 IPR000225 GO:0005515
Spst8g02287 419 FunFam RING-type E3 ubiquitin transferase 118 408 - -
Spst8g02287 419 Pfam Armadillo/beta-catenin-like repeat 159 197 IPR000225 GO:0005515
Spst8g02287 419 Pfam Armadillo/beta-catenin-like repeat 200 238 IPR000225 GO:0005515
Spst8g02287 419 Pfam Armadillo/beta-catenin-like repeat 242 279 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02287 Spst-Chr8 33602586 33604277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02287 110 411 U-box Gene Family AT2G23140 49.338 7.03e-89 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02287 - - vun:114195316 586.26