Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02280 ATGGAACATGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCAGAATGTTTGCCAGTGAGGATGATGAGCATAATTTCACACCCCAATTTCCTCTCCTCCTTGGTGGGGGTGATGAATTGAACATTGTGACACGGCAAGCCGCATTTTGTGCTGTTCCTGAAGCTGGTCAAAATGAGCTGATATTTTATACTTTAGATGCTCACAACTCAAATTCTTCACAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTATCTTCATTGCCAATCCGAGTAGCTCAAACTATTATTTTAGCAACGCTGATAATGTGCTAGCACATAATGCATGTGCATATTCCATGGATGAGAAACATTTTTCCCCTTTTGCTCCATCGCTTGCTAACATTGTATTGGAAGAGAGTGTGAATCTGTACGAAGATTTGGCAAGTGACAGATTGGAGAATTGTGAATGCAATCAAATGGAACCTATTGTTTTTCCTTCCAAAAGGAAGCTTGATGAACATGCTGAAGGTAAAATCAGCAACAGATCAGAGAATCACAAGAAAAAGGCTCGCGTTTTAATCGATGGGCAAGGATGTATGAAGAACACAATGTCCAAGAAGAATCAGAAACATGGCAACAATAGGGAAGAGGCAGAAGAGACTAATGTAGGATCAGATGGACAAAGCACTAGCAGTAACATGTCAGAGGATGACAACAAGGAAAATATTGGAGGAGCTACTTCGGGCTCTAAATCTGTTCTCAACTCAAACGGAAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAAAGTCTCTATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGACTAAGAATCCTACAGAATCTTGTCCCTAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCCGTCAATTATGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTAGACATTGGACTCAATCTCAACATGAAGAATTCTCAACCAGTCTAA 1071 0.4034 MEHVGAFPDGEWDCFRRMFASEDDEHNFTPQFPLLLGGGDELNIVTRQAAFCAVPEAGQNELIFYTLDAHNSNSSQYISQESSYSNSSNCSGDDTIFIANPSSSNYYFSNADNVLAHNACAYSMDEKHFSPFAPSLANIVLEESVNLYEDLASDRLENCECNQMEPIVFPSKRKLDEHAEGKISNRSENHKKKARVLIDGQGCMKNTMSKKNQKHGNNREEAEETNVGSDGQSTSSNMSEDDNKENIGGATSGSKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLNLNMKNSQPV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02280 356 CDD bHLH_AtIND_like 271 333 - -
Spst8g02280 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Spst8g02280 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 86 342 - -
Spst8g02280 356 MobiDBLite consensus disorder prediction 227 274 - -
Spst8g02280 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 334 IPR036638 GO:0046983
Spst8g02280 356 SMART finulus 276 325 IPR011598 GO:0046983
Spst8g02280 356 MobiDBLite consensus disorder prediction 180 282 - -
Spst8g02280 356 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Spst8g02280 356 Coils Coil 205 225 - -
Spst8g02280 356 Gene3D - 269 327 IPR036638 GO:0046983
Spst8g02280 356 MobiDBLite consensus disorder prediction 180 198 - -
Spst8g02280 356 FunFam Basic helix-loop-helix transcription factor 271 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02280 Spst-Chr8 33485525 33487581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02280 248 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 84.615 1.21e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g02280 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02280 - - gmx:100797500 509.605