Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02279 ATGAAGACCATTCTCTCTTCTGAGACCATGAACATTCCGGACGGTGTCAGCATTAAGGTCCATGCCAAGGTCATCGAGGTCGAGGGCCCTCGTGGAAAACTAGTCCGAGATTTCAAGCATCTCAACCTCGATTTTGAGCTCATCACCGACGAGTACGGCAAAAAGAAGTTAAAAATCGACGCTTGGTTTGGATCTCGGAAAACCTCCGCGGCCATTCGCACCGCCCTCAGTCACGTCGACAATCTCATCACCGGCGTCACCAAGGGCTACCGCTACAAGATGAGGTTCGTCTACGCTCACTTCCCCATCAACGCCAGTATAGGCAACAACAATAAATCCATTGAAATCCGAAATTTCCTGGGCGAGAAGAAGGTGAGAAAAGTGGACATGCTTGAGGGTGTGTCTGTTGTTCGATCTGAGAAGGTGAAGGATGAGTTGGTTTTGGACGGAAACGACATTGAGCTTGTTTCCAGGTCTTGTGCTCTGATTAACCAGAAATGCCATGTTAAGAACAAGGATATTCGGAAGTTCCTAGATGGTATTTACGAATTTACTTCATCTGTTGACGAAGAATGA 576 0.4722 MKTILSSETMNIPDGVSIKVHAKVIEVEGPRGKLVRDFKHLNLDFELITDEYGKKKLKIDAWFGSRKTSAAIRTALSHVDNLITGVTKGYRYKMRFVYAHFPINASIGNNNKSIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYEFTSSVDEE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02279 191 SUPERFAMILY Ribosomal protein L6 90 183 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 186 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 Gene3D - 90 191 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Spst8g02279 191 FunFam 60S ribosomal protein L9 90 190 - -
Spst8g02279 191 FunFam 60S ribosomal protein L9 1 89 - -
Spst8g02279 191 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 185 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02279 Spst-Chr8 33466799 33467916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02279 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 85.052 4.93e-119 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02279 K02940 - gmx:100306058 350.517