Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02278 ATGGCTTTGGAAGCTCTCAACTCTCCTACAACAACTGCTCCATCTTTCCCATTTGACGACCCAACAATTCCATGGGCGAAACGCAAGCGTTCCAAGCGCTCCCGCGACAATCCTTCCGAAGAAGAGTACCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCACCACCGCCACCACCAACCGCCACGTCACCGCTCCACCGCAACAACCCACCCGAGATCCTTCCTCCAAGCTCAGCTACAAATGCTCTGTCTGCGACAAAACATTCCCCTCTTACCAAGCGCTCGGTGGACACAAGGCCAGCCACCGGAAACTCGCCGGCGGCGGCACCGACGACCAGCCCACCTCCACCGCCACTAGCTCCGCCACCACCGCCGTTGGCGGTAGGGCCCACGAGTGCTCCATCTGTCACAAGTCATTCCCCACTGGACAGGCCCTCGGCGGACACAAACGTTGTCACTACGAAGGTAATGGAAACGTAAACAGTACCAGTGCTGTGACAGCCTCGGAAGGTGTGGGTTCCACTCACACTGTGAGTCCAGGCCACCGCGATTTCGATCTCAATATCCCGGCTTTTCCGGAGTTTGCGACAAAGGTCGGAGAAGACGAGGTTGAGAGCCCTCACCCTGTGATGAAGAAGCCACGTCTCTTTGTGATTCCCAAGATTGAAATCCCTCATTTTCAATGA 687 0.5691 MALEALNSPTTTAPSFPFDDPTIPWAKRKRSKRSRDNPSEEEYLALCLIMLARGTTATTNRHVTAPPQQPTRDPSSKLSYKCSVCDKTFPSYQALGGHKASHRKLAGGGTDDQPTSTATSSATTAVGGRAHECSICHKSFPTGQALGGHKRCHYEGNGNVNSTSAVTASEGVGSTHTVSPGHRDFDLNIPAFPEFATKVGEDEVESPHPVMKKPRLFVIPKIEIPHFQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02278 228 MobiDBLite consensus disorder prediction 1 37 - -
Spst8g02278 228 SUPERFAMILY beta-beta-alpha zinc fingers 80 153 IPR036236 -
Spst8g02278 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Spst8g02278 228 MobiDBLite consensus disorder prediction 1 17 - -
Spst8g02278 228 SMART c2h2final6 80 102 IPR013087 -
Spst8g02278 228 SMART c2h2final6 131 153 IPR013087 -
Spst8g02278 228 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 193 IPR044653 GO:0003700
Spst8g02278 228 MobiDBLite consensus disorder prediction 58 77 - -
Spst8g02278 228 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Spst8g02278 228 Pfam C2H2-type zinc finger 80 104 - -
Spst8g02278 228 Pfam C2H2-type zinc finger 130 154 - -
Spst8g02278 228 MobiDBLite consensus disorder prediction 23 37 - -
Spst8g02278 228 Gene3D Classic Zinc Finger 78 153 - -
Spst8g02278 228 MobiDBLite consensus disorder prediction 100 121 - -
Spst8g02278 228 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Spst8g02278 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 153 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02278 Spst-Chr8 33412904 33413590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02278 1 224 C2H2 Transcription Factor Family AT1G27730 55.833 1.56e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g02278 zf-C2H2_6 8.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02278 - - gmx:547886 378.637