Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02248 ATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGATAGTGGTGGCGCCTTTGGTTCTTCTCTTGCTGCAGATCCTGAGACAAAGCACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGCAAGTGAAGATGAGTGGAGGACTTCAAAAGTGGCTAAAACTGATGACAACATGTCTGCTGCATCCAAAGCAATGCTCTTTCACCAGAGAAACTCTCTGCTGAGATCTAATGCCACACTTTTCTCAGAGGGCCACAATCAGCCACAAATGCTGAGTTTCTCCTCTCCAAAATCAGAGCCTTTGTTGGTGGACAAGGCCTCCTCAAATGCCACATTGCCTTTTTCTTACCACCAATTGTCTAGTTACAGCAGAAATACAGGTTACAGTTCGGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGACCATTCACTCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACAGCAAACGTGCCTGTACCAACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAACCGGACTCCTCAGACCCAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAACCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGATGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTACTACTCCTAATGCTTCCTCAAACTCCATTGTGGTGCCTGGCAACAACAATACCTTTTCACACAACAATGTGCACCACCCTCTTCCACCTCATTCCTCTCCAGCCAACACCATGAATAGGATGTTTATGAGTAACAAAGAGAACAATAACAACGCTAGTGAGAGGATGCAGGATGGCCCTGCACTTCCCATGGTGCCTCCAACTCTCGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACACCAACTCCCATATGATGAATCATCCTCGAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAACAACATTCCCTCAGGCACTTCATTGACGACTCTCCCAAACCACAGTCTCATCATCACCATCATCGTTCATCTGTTTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAATTATCAATCTCCATACCAATATCTTCCTCAGACTTCATGTCATTCACTTCCTCCTCACCCTCCAATGAGAAACTCACATTGTCACCACTAAGGCTTTCAAGGGAGTTAGACCCCATTCAAATGGGATTGGGAGTGGGAAGTGGTGCTTCCAATGAGTCAAACACTAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAATTCTATGGGTGGTCCTCTTGGAGAGGTTTTGAACCTAAGTAGTAGTAATAACAACAGCATTGGAAGTGATCACTGTGGCAAGAACACTTCTGCTCTTAACCTCATGAAAGATGGGTGGGACAATAGTCCTCCACTAGGATCATCGCCAAATGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGGAGCAGTCCAAGGGCAGAGAACAACAACAACAAAGAAGGCGTCAGTGTCACCACCTTGTGCAATGCCTTGTGA 1815 0.4727 MDLGVVGLEGLVGSDSGGAFGSSLAADPETKHKWYGSGVLKQERSGTASEDEWRTSKVAKTDDNMSAASKAMLFHQRNSLLRSNATLFSEGHNQPQMLSFSSPKSEPLLVDKASSNATLPFSYHQLSSYSRNTGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSAAFCNFSTGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTTTTPNASSNSIVVPGNNNTFSHNNVHHPLPPHSSPANTMNRMFMSNKENNNNASERMQDGPALPMVPPTLELKPKDPFMIHKHQLPYDESSSRNNNEFGLVTSDSLLNPSQKRSFGSSSSQKDDSESQQQHSLRHFIDDSPKPQSHHHHHRSSVWPELDNMQSDRTQLSISIPISSSDFMSFTSSSPSNEKLTLSPLRLSRELDPIQMGLGVGSGASNESNTRQANWIPITWENSMGGPLGEVLNLSSSNNNSIGSDHCGKNTSALNLMKDGWDNSPPLGSSPNGVLQKTAFGSLSNSSAGSSPRAENNNNKEGVSVTTLCNAL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02248 604 SMART QLQ_2 151 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst8g02248 604 Pfam WRC 222 264 IPR014977 -
Spst8g02248 604 MobiDBLite consensus disorder prediction 369 406 - -
Spst8g02248 604 MobiDBLite consensus disorder prediction 266 337 - -
Spst8g02248 604 MobiDBLite consensus disorder prediction 407 435 - -
Spst8g02248 604 PANTHER GROWTH-REGULATING FACTOR 5 90 458 IPR031137 GO:0005634|GO:0006351|GO:0032502
Spst8g02248 604 Pfam QLQ 152 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst8g02248 604 MobiDBLite consensus disorder prediction 557 597 - -
Spst8g02248 604 ProSiteProfiles QLQ domain profile. 152 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst8g02248 604 MobiDBLite consensus disorder prediction 251 353 - -
Spst8g02248 604 ProSiteProfiles WRC domain profile. 221 265 IPR014977 -
Spst8g02248 604 MobiDBLite consensus disorder prediction 549 597 - -
Spst8g02248 604 MobiDBLite consensus disorder prediction 365 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02248 Spst-Chr8 32864801 32868630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02248 41 602 GRF Transcription Factor Family AT2G22840 43.271 9.64e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Spst8g02248 WRC 5.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02248 - - gmx:100818860 951.044