Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02245 GGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCTACACACATAAACTTCCCACTCGAAAATTACCAAACTGAACTTGAAGAAATGAAGAAAATGAGTAGGCAGGAATATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCTTCAATGTACAGAGGAGTGACAAGGCACCACCAACATGGCAGGTGGCAAGCAAGGATTGGCAGAGTTGCAGGAAATAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAAGCAGCTGAAGCATATGATGTAGCTGCAATCAAATTTCGTGGGGTGAATGCTGTCACCAACTTTGACATATCAAGATACGATGTTGAGAGGATCATGGCGAGCAACACCCTTCTTGCTGGAGAGTTAGCTAGAAGAAACAAGGAAAGTGAGCCGAGAGCTGAGGCCATAGAGTACAATGTTGGGTCAAGCCAACAAGTCATAAGTAGGGAAGAAGCTGAGACCGTGAACAACAATGACAGTAATGAGAATGGTTCATCAGATTGGAAGATGGGTTTGTATCATCAGCAACAGTCAAGCAACAACTGTGACATGAAAACCATGAAGGGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCGGTAGGATCTAGCCATGCCATGCTAGAGGAGTCTACTAAGCTAGGGACTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTGAGCAGCTCAAGGGAGGGTAGTCCTGACAAAACGGGTCCCACTTTGCCCTTTCCTAAGCCTCCACTGGGTTCCAAGATTGTCACTAGCCCTATTGCTAATGGTGTAACTGTTAGCTCATGGTTTCCCTCTCAAATGAGGCCAGTCTCAATGTCTCACTTGCCAGTTTTTGCTGCTTGGGGTGATACCTAG 963 0.46 GYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKKMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEPRAEAIEYNVGSSQQVISREEAETVNNNDSNENGSSDWKMGLYHQQQSSNNCDMKTMKGGNYRGSAFSVSLQDLIGIDSVGSSHAMLEESTKLGTHFSNPSSLVTSLSSSREGSPDKTGPTLPFPKPPLGSKIVTSPIANGVTVSSWFPSQMRPVSMSHLPVFAAWGDT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02245 320 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 200 - -
Spst8g02245 320 MobiDBLite consensus disorder prediction 243 267 - -
Spst8g02245 320 FunFam AP2-like ethylene-responsive transcription factor 64 125 - -
Spst8g02245 320 SMART rav1_2 1 35 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Spst8g02245 320 Gene3D AP2/ERF domain 1 31 IPR036955 GO:0003700|GO:0006355
Spst8g02245 320 SUPERFAMILY DNA-binding domain 64 125 IPR016177 GO:0003677
Spst8g02245 320 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 MobiDBLite consensus disorder prediction 243 280 - -
Spst8g02245 320 ProSiteProfiles AP2/ERF domain profile. 1 29 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 Pfam AP2 domain 66 115 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Spst8g02245 320 SUPERFAMILY DNA-binding domain 2 31 IPR016177 GO:0003677
Spst8g02245 320 CDD AP2 64 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02245 Spst-Chr8 32757161 32758820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02245 46 320 AP2-EREBP Transcription Factor Family AT4G37750 27.742 5.79e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst8g02245 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02245 K09285 - gmx:100798179 544.658