Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02243 ATGGCCCTACACGTGTCCCCCCTCCTCACAGGTTGCATGCTAGCATTTGATGCTCTCGTCAGAGACACCCCAGTAAAGGGAACTCTGCTAAATTCTGTCTCTATCAGGGAAGCATTTTTTCTCCTTTTACTGAGCATTGAAGCAGTAGACTTGATCTTAGGGTTTTTGAAGGAACAGTCCTGCAAGATATCTCTCGAGCCAACTTATTGTGACTGTTTAGGGACTATTGAGTTTGTTCAGATGGGGGGTCAGGAAAATACCATGGGGTTTCAACACGGAAATGAGAGCATTCTGACTTGTCCATCTTCAGGTCTCAGTGGTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCTGTGTCGATGGCCAAGGCTTCAGATGTAGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTTCCTTAAGTCAGGCTCAAACTTTTGGAGGCTCCTCATTGGTTTCTCATACCGAGTTTGCCAATGCCAACCCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATAAGCAACACTTCCCACCTAGTTCAATACATGTCCGACTCAAATCTTGGGGGCATGGTCCCCAAGGTACACTCCTATGCAAGTGGGGGCTTCTCAGAAATGGTTGGTGCTGGCTGCTTTGGCCAACATGGGTCTGGTGATGTGGCTAACTCACGGTATCCACCACATTATAATCCGATCAAGGAGGCTCAGATTAATGGTGAACAATCTCAGGTTGAGGACTCAATTCCTGAAGAGGAAGCACCAGGATCTGCTCCTAGTGGGAATAGAAGAAAGAGAGGTCTTGATCATAATTCTTCCTTCAGCCCAAATAAGAATGCTGAGAGTGAAATTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAAAAATAGTGCAGATTTGCGTGGCAAGCAATCAGTGAAGCAAGCTAAAGACAATAGTTCTCAAAGTGGAGAAGCTCCCAAAGAAAACTTCATTCACGTGAGAGCAAGAAGAGGACAAGCCACTAATAGTCATAGCCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTGCCAGGTTGCAACAAGATAACTGGCAAAGCTGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTAGACAGGATCCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTAGTTCATATGGTCCAGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTTCCCCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1530 0.4451 MALHVSPLLTGCMLAFDALVRDTPVKGTLLNSVSIREAFFLLLLSIEAVDLILGFLKEQSCKISLEPTYCDCLGTIEFVQMGGQENTMGFQHGNESILTCPSSGLSGANVNVSEMAISSVSMAKASDVANPFLASSAWDPLVSLSQAQTFGGSSLVSHTEFANANPSYPLVLENQGISNTSHLVQYMSDSNLGGMVPKVHSYASGGFSEMVGAGCFGQHGSGDVANSRYPPHYNPIKEAQINGEQSQVEDSIPEEEAPGSAPSGNRRKRGLDHNSSFSPNKNAESEIVKDSPGRACDGPKEHEKKPKVEQKNSADLRGKQSVKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGISSYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02243 509 Gene3D - 346 420 IPR036638 GO:0046983
Spst8g02243 509 Pfam Helix-loop-helix DNA-binding domain 352 400 IPR011598 GO:0046983
Spst8g02243 509 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 244 450 IPR024097 GO:0006355
Spst8g02243 509 CDD bHLH_AtBPE_like 339 424 - -
Spst8g02243 509 MobiDBLite consensus disorder prediction 243 340 - -
Spst8g02243 509 FunFam Basic helix-loop-helix transcription factor 346 418 - -
Spst8g02243 509 SMART finulus 355 405 IPR011598 GO:0046983
Spst8g02243 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 399 IPR011598 GO:0046983
Spst8g02243 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 417 IPR036638 GO:0046983
Spst8g02243 509 MobiDBLite consensus disorder prediction 287 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02243 Spst-Chr8 32712879 32717189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02243 81 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.018 2.24e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g02243 HLH 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02243 - - gmx:100801930 784.637