Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02236 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATCGCTTTGCCTCAAAAAATAGGTCTTAAGCGATGTGGCAAGAGTTGTCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAGGCACGGTGGCTTCTCCGAAGAAGAAGACAACATTATTTGCAACCTTTACATCAGTATAGGAAGCAGGTGGTCGGTGATTGCAGCACAATTGCCAGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTTTGGGGAAGCATCGAAGAGAGCCACGTAATAGAGGAAATTACAACAGTGTTAAGCAAGGAATTAGTGATGCTAATAGAAGGAGTAGTAATGGTGATTCTTCTTCCTTATCCTTGGTTCAGGAAAATAGTAGCAACAGCCAACAACAACAACCATCACCATGTTGGCCGCAGAACATTAACATGCCTGTGCTGCCACTACCAATAGTACCCTTGCCATACACAAACCAAGGTCCATGTTTCAACGACCAAGATTCTATCAAGAAACTCCTCATCAAACTTGGAGGAAGATTTTCAGGTGATTATTACCAGCCTACGCTTGATGGGTTGAATCTTCAATTCTCATCAGAAGGGCAACAAGTTTACCAAGAACAAGTCCATGTTGGTTCTTCCTCTTCTTCGGCCTGCATTGCCAACAACGAAGTACAATTTTCACAAACTTGTCAATACTCTGGAGTCGATGACTTGGTGCAAGGACAAGGTGGTAATTTCACCCCATTATTTGAGGAAATGGTGTCTTCTTCTAATTATTCAGATGGGTTGGAGTTCTTGTACAATGATGGCATGATCGACCATAAGATAATAGACTCTACTATTACTACTACTTGTGCCCAAAGCACTGCTACTATTACCACAAACTGGAGTGAAACTACCACTTCCATTTACAACCATCATTCACTTGCTTCCAATTTTCAAGGTCAAGGTCTGACACAAGAATGTGCTTTGCAAGAGTTTAGCTACCCCAGGACACAATAA 1104 0.4266 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICNLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQGISDANRRSSNGDSSSLSLVQENSSNSQQQQPSPCWPQNINMPVLPLPIVPLPYTNQGPCFNDQDSIKKLLIKLGGRFSGDYYQPTLDGLNLQFSSEGQQVYQEQVHVGSSSSSACIANNEVQFSQTCQYSGVDDLVQGQGGNFTPLFEEMVSSSNYSDGLEFLYNDGMIDHKIIDSTITTTCAQSTATITTNWSETTTSIYNHHSLASNFQGQGLTQECALQEFSYPRTQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02236 367 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Spst8g02236 367 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst8g02236 367 MobiDBLite consensus disorder prediction 116 173 - -
Spst8g02236 367 FunFam Transcription factor MYB36 70 141 - -
Spst8g02236 367 PANTHER OS09G0431300 PROTEIN 1 285 - -
Spst8g02236 367 CDD SANT 71 113 IPR001005 -
Spst8g02236 367 Gene3D - 7 68 - -
Spst8g02236 367 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst8g02236 367 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Spst8g02236 367 CDD SANT 16 62 IPR001005 -
Spst8g02236 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Spst8g02236 367 MobiDBLite consensus disorder prediction 130 173 - -
Spst8g02236 367 Gene3D - 70 146 - -
Spst8g02236 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Spst8g02236 367 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst8g02236 367 FunFam Transcription factor RAX3 7 68 - -
Spst8g02236 367 SMART sant 67 115 IPR001005 -
Spst8g02236 367 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02236 Spst-Chr8 32539203 32540872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02236 1 209 MYB Transcription Factor Family AT3G49690 60.377 2.37e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g02236 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02236 K09422 - gmx:100800290 574.318