Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02235 ATGAGTTTTCATGATACACCAAACACAGGACTTGGTCTCGGTCTCGGTCTTGGCCTTGGTCTTGTTACCTTCCATGATCAATCAGAGAGTTGCATGAGGAGTGATGATGACCCCTTGAGAGAAAGCCACACGATCAAAACGGTGGAGAATCCATCAAAATTTAACAAGACATACCCTTCACTGACATTAGCACCACCAGATGATGATGATGAAGAAGTGAAAAATGATCAACCAAGTTCCAAGACCGAGTCCTATGAATATTTTCGGCCCCAAGTTTCTTCTCCTAGTGTGGTGTCTTCATTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCTTGGGAGAAGAATTTGAGGTAGAAGTAGAGAAAGTTCCAACAAGAGTAGGGGATGTTGATGAAGATGGCAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAGGAAAACTTCCGAGAGCATTCCACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAACGAAGCTGAATCTGCGAACGAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAACAAACTGAATCAGACTGTGATCTATTAAAGAAGTGTTGTGACACTCTATCAGAAGAAAACAAGAGACTGCAAAAGGAGCTTCAAGAACTGAAGTCAATGCAAGCAATGCCAGTTCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCATATGCCCTTCTTGTGAGAGAATATGTGATAGCAACAATGGTGATGATGAAAATAACAACAACAATGCTTCAAACTTACTTATTAGTTCAAAAACACATCATCATCATCATAATCACTTTTACAAAAGTAACTATCCATTCTCCCACTCTTCATCTGCAGCATGCTAG 906 0.4194 MSFHDTPNTGLGLGLGLGLGLVTFHDQSESCMRSDDDPLRESHTIKTVENPSKFNKTYPSLTLAPPDDDDEEVKNDQPSSKTESYEYFRPQVSSPSVVSSFSNSSSIKRERDQALGEEFEVEVEKVPTRVGDVDEDGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELATKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDTLSEENKRLQKELQELKSMQAMPVPLYMQIPAATLSICPSCERICDSNNGDDENNNNNASNLLISSKTHHHHHNHFYKSNYPFSHSSSAAC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02235 301 Coils Coil 202 232 - -
Spst8g02235 301 SMART halz 196 239 IPR003106 GO:0006355|GO:0043565
Spst8g02235 301 MobiDBLite consensus disorder prediction 30 86 - -
Spst8g02235 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 269 - -
Spst8g02235 301 MobiDBLite consensus disorder prediction 30 47 - -
Spst8g02235 301 CDD homeodomain 139 197 IPR001356 GO:0003677
Spst8g02235 301 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Spst8g02235 301 SUPERFAMILY Homeodomain-like 135 197 IPR009057 -
Spst8g02235 301 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Spst8g02235 301 FunFam Homeobox-leucine zipper protein 18 124 201 - -
Spst8g02235 301 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Spst8g02235 301 SMART HOX_1 138 200 IPR001356 GO:0003677
Spst8g02235 301 Pfam Homeobox associated leucine zipper 196 229 IPR003106 GO:0006355|GO:0043565
Spst8g02235 301 Gene3D - 132 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02235 Spst-Chr8 32442099 32444251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02235 1 254 Homeobox Transcription Factor Family AT4G37790 47.761 1.24e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst8g02235 Homeodomain 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02235 K09338 - gmx:100807072 443.736