Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02234 ATGAAAGGAAACCTTCACAACAACAACACCACCACTATGCATCACCATCCCCAGCAACAAGGAGGGAGTCCAACAAGCTCCACTAGTGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTCCACCTGAAGTGGTGGCGCGTATGGTTGCGGTGAAGCAAGAGTTTGAGGCACGGCAAAGATCCTCAGGTGGTTCAAGGGATACTTCAAAAGACCCTGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAACTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTGTGCAATGGACCCGTCAGGATCTTCTCTGAAGACAAAAGTGAAGGGGTTGGTTCATCAGAAGATGATCAAGACAACAGTGGAGGAGAAACAGAACTTCCGGAGATTGATCCCAGAGCAGAAGATCGTGAGCTTAAAAACCATTTGCTGAGGAAGTACAGTGGTTACTTGAGTAGCCTTAAGCAAGAACTTTCAAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCTAGGCAAAAGCTACTTAACTGGTGGGAGTTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTAGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCACTACATGGCAGATGAGTGA 864 0.4387 MKGNLHNNNTTTMHHHPQQQGGSPTSSTSEVEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAVKQEFEARQRSSGGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEDKSEGVGSSEDDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02234 287 FunFam Homeobox protein knotted-1-like 2 200 262 - -
Spst8g02234 287 SMART KNOX2_2 83 134 IPR005541 GO:0003677|GO:0005634
Spst8g02234 287 CDD homeodomain 207 259 IPR001356 GO:0003677
Spst8g02234 287 ProSiteProfiles 'Homeobox' domain profile. 195 258 IPR001356 GO:0003677
Spst8g02234 287 SMART ELK_2 175 196 IPR005539 GO:0003677
Spst8g02234 287 Pfam KNOX2 domain 87 133 IPR005541 GO:0003677|GO:0005634
Spst8g02234 287 Pfam ELK domain 175 196 IPR005539 GO:0003677
Spst8g02234 287 ProSiteProfiles ELK domain profile. 175 195 IPR005539 GO:0003677
Spst8g02234 287 SUPERFAMILY Homeodomain-like 196 271 IPR009057 -
Spst8g02234 287 MobiDBLite consensus disorder prediction 141 172 - -
Spst8g02234 287 Pfam KNOX1 domain 33 75 IPR005540 GO:0003677|GO:0005634
Spst8g02234 287 Pfam Homeobox KN domain 215 254 IPR008422 GO:0003677|GO:0006355
Spst8g02234 287 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 265 - -
Spst8g02234 287 MobiDBLite consensus disorder prediction 1 31 - -
Spst8g02234 287 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Spst8g02234 287 Gene3D - 200 262 - -
Spst8g02234 287 ProSitePatterns 'Homeobox' domain signature. 233 256 IPR017970 GO:0000981|GO:0006355
Spst8g02234 287 SMART HOX_1 197 262 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02234 Spst-Chr8 32410655 32418402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02234 15 286 Homeobox Transcription Factor Family AT4G08150 76.534 2.80e-146 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst8g02234 KNOX2 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02234 - - vum:124822256 540.036