Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02229 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAGAGAGGACCATGGTCCCCAGAAGAAGATGCAACACTCAAAGACTATGTGGAGTCTCATGGCACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACTGAGGAAGAGGACAACATCATTTGCAACCTCTATGGCCAATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAACGATGTGAAAAACTACTGGAACACAAAACTGAAGAAGAAGATAATGGCAGGAAAAGTTAGCCTCAAAACATTGGCTGACAATGACACTCTTCCTTCAACTTCAACCCCATTACTAACCAACCAGAGTCTCAGTACTCAAAATTCACCTTTCATTGCTTCACCAAATCAAACTTCCCTGCCCTTGGTGCTGCCAACCTTAGCTGCTAACAATGACGCAGGCACCATTAATAAAAAAAGCATCATTAGTTTTGACCAAACAAATCATCATGGATTGTATAGTCCACAAGTCATGCATGGTGTCTCACAAATTGGTGCAAGTTCAAGGATCAACTACAGCACCAATGATAATGATAACAGTAATCACATGGTGTCATTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCAATTGCAATGAGCTACAACAAATGTGTTGTGTCACAGCCTCAGCAACAACAACAACATGCTAGTGATGAATCTATGGACATGTTGATGGAATTTGGCTTTGGATTTCCCTATGATTTGGTCAATGGTCCTAACTGCCATTATGAGAGAGTTGGTGAAATATTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCTTATTGA 921 0.4267 MGRAPCCDKANVKRGPWSPEEDATLKDYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVSLKTLADNDTLPSTSTPLLTNQSLSTQNSPFIASPNQTSLPLVLPTLAANNDAGTINKKSIISFDQTNHHGLYSPQVMHGVSQIGASSRINYSTNDNDNSNHMVSLSQEGSSSISDSSSIAMSYNKCVVSQPQQQQQHASDESMDMLMEFGFGFPYDLVNGPNCHYERVGEIFAPEWVDFSYADIKPY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02229 306 Gene3D - 7 68 - -
Spst8g02229 306 FunFam Transcription factor RAX3 7 68 - -
Spst8g02229 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Spst8g02229 306 SMART sant 67 111 IPR001005 -
Spst8g02229 306 SMART sant 13 64 IPR001005 -
Spst8g02229 306 ProSiteProfiles Myb-like domain profile. 63 109 IPR001005 -
Spst8g02229 306 PANTHER OS09G0431300 PROTEIN 1 260 - -
Spst8g02229 306 CDD SANT 71 109 IPR001005 -
Spst8g02229 306 CDD SANT 16 62 IPR001005 -
Spst8g02229 306 Gene3D - 69 130 - -
Spst8g02229 306 SUPERFAMILY Homeodomain-like 11 105 IPR009057 -
Spst8g02229 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Spst8g02229 306 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst8g02229 306 Pfam Myb-like DNA-binding domain 69 107 IPR001005 -
Spst8g02229 306 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02229 Spst-Chr8 32249297 32252622 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02229 1 114 MYB Transcription Factor Family AT5G65790 81.356 8.15e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g02229 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02229 K09422 - gmx:100789985 441.039