LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g02082	ATGGATGTTGTGGATTTAGGTAGTATGATCAGCCGGCCACAAAAGCACAATAAGGTGTATGGTCTTGATAATCCTCAGTTGCAACTTGCAGTTTTGCAGAAAAATTTGCCTGCAGCCCATCTCATTTGGCAAGAGTATGTGAAAAACTATAGCACGAGTATCATTGCTTTGCGTAGATTCATTTGGTCATTTACAAGGTTAGGAGATTTACAATCTGCATATAAAACTCTACAACAAATGGTGTCATTAGCCATCAGTGGAAACATTTCTATTACTAGAACAGATTATGGGAAGTTGTATTCTACTAGAGTGGATATTCCTGTTCCTTCAAATAAGGGGATAGGCTTAGCCACATTGGACTTGAAGGGCAAAAATAAATTGGACTCTTGTAAGAGTACTGAATTAGATGGACTCAATGGAGAAGAACACTCACTGCTTATGAAAGTGTTGAGGTGGTCCTTTAATGATATAATACATGGGTGTGCAAAGCAAAAGAATTATATGCTTGCAAGGCAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCTGCCATACATATAATGGCATTATTAAAGCAGTTATTTCCCATGGAAGTTTTGGGGATGCTTTAGGAGTGTTGAAAAAAATGCAGCAGAAGAATTTGAAGCCAAATGATTCAACTTTAGCAACACTTTCAATCACATGCAGCAAAGCACTACAATTAGATTTAGCTGAGGCTTTGCTGAATCAGATTTCTGAATGTCTATATCCACATCCTTATAATGCTTTGCTAGCATCATGTGATGAATTGAATCAACCTGAACGTGCTGTGCGAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTGATATCAGGACTTTCGAGCTTCTATTTTCTTTATTTGGTGTTGTAAATGCCCCTTATGAAGAAAGTAATATACTGTCACAGGTGGATGCTTTTAAAAGAATAAATGCTATAGAAAAGGATATGGCCACAAATGGCATTTGGCACAGTCATCTTTCAATAAAAAACTTGTTGAGAGCCCTTGGAGAAGAAGGGATGATAAGAGAACTGATTCAGTATTTACATGTGGCAGAGAATCTTTTCATTTATAGAAACCCTTCATTGGGAACACGTATATACAACATAGTGTTACATTATCTTGTCGAAGCCAAAGAAAGCGACATGGCAATTGCAATTTTCAAGAAGATGAAGTTATGCGGCTGCAACCCTGACTCTGAAACATACAATATAATGATTGACTGTTGTACCATCGGAAAAAGTTACAGATCTGCTTGTTTGCTGATTTCAATGATGATACGGAATGGGTTTTGTCCAGGGATATGTACATATACTGCTTTCATTAAGATTTTGCTGCAAGATGAGAACTTTGATGAAGTCATGAATCTTTTGAAACAAGTCATATTGGATGGCATCCAACCTGATGTACTGCTGTTCAATACTGTTCTTAAAGAAGCATGTTACAAGGTAATTTACTTTTCATAG	1497	0.3707	MDVVDLGSMISRPQKHNKVYGLDNPQLQLAVLQKNLPAAHLIWQEYVKNYSTSIIALRRFIWSFTRLGDLQSAYKTLQQMVSLAISGNISITRTDYGKLYSTRVDIPVPSNKGIGLATLDLKGKNKLDSCKSTELDGLNGEEHSLLMKVLRWSFNDIIHGCAKQKNYMLARQLMLQMENLGLQPSCHTYNGIIKAVISHGSFGDALGVLKKMQQKNLKPNDSTLATLSITCSKALQLDLAEALLNQISECLYPHPYNALLASCDELNQPERAVRVFAKMKQKKVLPDIRTFELLFSLFGVVNAPYEESNILSQVDAFKRINAIEKDMATNGIWHSHLSIKNLLRALGEEGMIRELIQYLHVAENLFIYRNPSLGTRIYNIVLHYLVEAKESDMAIAIFKKMKLCGCNPDSETYNIMIDCCTIGKSYRSACLLISMMIRNGFCPGICTYTAFIKILLQDENFDEVMNLLKQVILDGIQPDVLLFNTVLKEACYKVIYFS	498

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g02082	498	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	185	219	IPR002885	-
	Spst8g02082	498	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	150	184	IPR002885	-
	Spst8g02082	498	Gene3D	Tetratricopeptide repeat domain	378	494	IPR011990	GO:0005515
	Spst8g02082	498	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	409	443	IPR002885	-
	Spst8g02082	498	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	374	408	IPR002885	-
	Spst8g02082	498	NCBIfam	pentatricopeptide repeat	377	410	IPR002885	-
	Spst8g02082	498	NCBIfam	pentatricopeptide repeat	446	480	IPR002885	-
	Spst8g02082	498	NCBIfam	pentatricopeptide repeat	187	220	IPR002885	-
	Spst8g02082	498	NCBIfam	pentatricopeptide repeat	412	444	IPR002885	-
	Spst8g02082	498	NCBIfam	pentatricopeptide repeat	256	288	IPR002885	-
	Spst8g02082	498	NCBIfam	pentatricopeptide repeat	153	186	IPR002885	-
	Spst8g02082	498	Gene3D	Tetratricopeptide repeat domain	147	253	IPR011990	GO:0005515
	Spst8g02082	498	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	252	286	IPR002885	-
	Spst8g02082	498	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	22	493	-	-
	Spst8g02082	498	Pfam	PPR repeat family	377	420	IPR002885	-
	Spst8g02082	498	Pfam	PPR repeat family	153	196	IPR002885	-
	Spst8g02082	498	Gene3D	Tetratricopeptide repeat domain	254	373	IPR011990	GO:0005515
	Spst8g02082	498	Pfam	Pentatricopeptide repeat domain	256	299	IPR002885	-
	Spst8g02082	498	Pfam	Pentatricopeptide repeat domain	435	488	IPR002885	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst8g02082	153	493	Glycosyltransferase	AT1G05670	20.270	1.17e-15	78.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g02082	-		-	vun:114194590	813.527

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g02082	8	28857908	28863879	Spst8g02082	8	28857908	28863879	ECH