Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02080 ATGGAGGAACACATAGACCCAAGCAGTGGCTTCTGCTCCTCCAACTCAATCTTCTACAGCAAGCGCAAGCCACTCCCACTCCCTCCCAACAACGCCTTGGATGTCACCACCTTTATCTCCTCCCGAGCCCACCGCGGAACCACCGCCTTCATCGACGCCGCCACCGGCCACCAACTCACCTACACCCAGCTATGGCGAGCGGTGGAGGGTGTGGCTGCCTCTCTCTCCGACATGGGGATCCGAAAGGGCAACGTCATCCTCGTCCTTTCTCCCAACTCCATCCACTTCCCGGTGGTGTGCCTGGCCGTCATGTCCCTTGGCGCCATCATCACCACCACCAACCCCCTCAACACCGCGCGCGAAATCGCCAAGCAGATCGCCGATTCCAAGCCTCTGCTCGCCTTCACCATCCCTCTCCTGCTCCCCAAACTCACTCAGGCAGCACCCTCTCTACCAATCGTTCTAATGGACACGACTACCCATTCACCCCTTCCCAACGCCAAGATTGTTACCACACTCCACGACATGGCCAAGAAGGAACCACGGAATCAGCGCGTAAGGGAGCGCGTGGACCAGGACGACACGGCCACTCTGCTCTACTCCTCCGGCACCACTGGACCCAGCAAGGGCGTGGTTTCCTCTCATCGGAACCTCATAGCCATGGTCCAAATCGTCCTGGGTCGCTTCCACATGGAAGAAAACGAAACCTTCATCTGCACGGTCCCCATGTTTCACATATACGGTCTCGTCGCCTTCGCCACCGGGCTCCTCGCCTCCGGCTCAACCATCGTCGTCCTCTCCAAGTTCGAGATGCACGACATGCTCTCCGCCATCCAGAGATTCCGCGCCACTTACCTCCCCCTGGTTCCGCCCATTCTGGTTGCCATGCTCAACAACGCAGACGCCATTAAGGGAAAGTACGATATCAGGTCGCTGCATTCGGTGCTCTCCGGTGGGGCTCCCTTGAGTAAGGAGGTGATAGAGGGGTTTGTGGACAAGTACCCCAACGTCACCATACTTCAGGGTTATGGTTTGACGGAATCCACCGGCGTTGGGGCCTCAACCGACTCCTTGGAGGAGAGTCGCAGGTACGGCACCGCCGGGCTCTTGTCGCCAGCCACCCAAGCCATGATCGTCGACCCGGACTCCGGCCAGTCGCTTTCAGCTAACCGCACCGGTGAGCTCTGGCTCAGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAAGCCACCACTTCAACCCTTGATTCAAAAGGATGGTTAAGAACCGGTGATGTTTGTTACATTGACAATGATGGATTCATATTTATTGTGGATAGATTAAAAGAGCTTATCAAATACAAGGGATACCAGGTTCCTCCAGCAGAACTAGAGGCCTTGTTACTGACTCATCCTGCTATTTTAGATGCTGCTGTTATCCCGTATCCAGATAAGGAGGCTGGGCAGATTCCAATGGCATACGTGGTGAGGAAGGATGGAAGTGGCTTATCAGAAAGCCAAGTTATGGATTTTGTTGGGGGACAGGTGGCTCCCTACAAGCGGATTCGAAAAGTTGCGTTCATCTCCTCCGTACCTAAAAATCCATCTGGCAAAATTCTTCGCAAGGATCTCATCAAGCTCTCAACTTCTAAACTCTGA 1644 0.5493 MEEHIDPSSGFCSSNSIFYSKRKPLPLPPNNALDVTTFISSRAHRGTTAFIDAATGHQLTYTQLWRAVEGVAASLSDMGIRKGNVILVLSPNSIHFPVVCLAVMSLGAIITTTNPLNTAREIAKQIADSKPLLAFTIPLLLPKLTQAAPSLPIVLMDTTTHSPLPNAKIVTTLHDMAKKEPRNQRVRERVDQDDTATLLYSSGTTGPSKGVVSSHRNLIAMVQIVLGRFHMEENETFICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSAIQRFRATYLPLVPPILVAMLNNADAIKGKYDIRSLHSVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPATQAMIVDPDSGQSLSANRTGELWLRGPTIMKGYFSNEEATTSTLDSKGWLRTGDVCYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAILDAAVIPYPDKEAGQIPMAYVVRKDGSGLSESQVMDFVGGQVAPYKRIRKVAFISSVPKNPSGKILRKDLIKLSTSKL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02080 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 541 - -
Spst8g02080 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 19 444 - -
Spst8g02080 547 Gene3D - 16 444 IPR042099 -
Spst8g02080 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Spst8g02080 547 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Spst8g02080 547 SUPERFAMILY Acetyl-CoA synthetase-like 41 542 - -
Spst8g02080 547 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Spst8g02080 547 CDD 4CL 27 539 - -
Spst8g02080 547 Gene3D - 445 545 IPR045851 -
Spst8g02080 547 Pfam AMP-binding enzyme 42 449 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02080 Spst-Chr8 28798912 28801747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02080 5 547 Monolignol Biosynthesis Gene Families AT1G20500 65.328 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02080 K10526 - gmx:100811344 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02080 8 28798912 28801747 Spst8g02080 8 28798912 28801747 ECH