Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02078 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTACTGGAAATATTTTAGCAGAATGTTCAGATTCAACTGTTCAGCTCAATATCAAGACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATATGCCTGTTTCATTGTTCAAAGAGAAAATTGCAAGTGAAATTGGTGTTCCTGTTAGTCAGCAACGACTGATATTTAGAGGAAAAGTTTTAAAGGATGAGCACGTTCTTTCTGAGTATCATATTGAGAATGGGGATACATTGCATTTAGTTGAAAGACAACCAAATCAGTCACAGGCTTCTGGTACAAGTGCTGATGAGTCAACTGGTACAAGTGGTAACAGAGGAAATGATGTGGGCTCAGGGGCTCCTCGTAATCGAGTTGGGCAAATTTCACACAGTGTTGTTCTTGGAACATTTAACGTGGGAGAGCAAGGTGAAGGAATTGTTCATGATCTCACTCGGGTTATTGGACATGTTTTAAATTCTATTGGAAACGGTGGCCAGAGTACAATTAATGGTCCTAATGCTATGCAAACTTCTTCAATCATGATGCGATATCATGTTGTGGTTCGTGTTGTGTATCAGGCTCATCCCGGGAATGAAACTGAAGGAATGCATGCTGGAAATCAAAACCCAGCAGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCGACATTCCAATCTGTATCTCATGTTGTTCAGATCCCTGTGGCGGCAGGGGCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGTTGGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTCACCAGTCAAATCTTTCACCAGCTAACACTGGAGATCAGCGAGTGGAATTGCCTATTAATTCACAAGGGTTGCCAACACTGGAAGCATTAATTACTGTCTTGCATCATGCAGAACGGTTACTTGGTGGTCAAGCTGTTGCTGCACTATCTCATATTGCAGGGCGCTTGGAAAGAGAAGGAGGTTCTGCTGATCCACGTATAAGGGGTCAGGTACAGTCAGAGTCAGTGCAAATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGGACTATGTTGACACTGCGTATGGGACAAGCTTCTGCAGAAGCGGTTGTTAATGCTGGACCAGCTGTTTACATTTCTCCATCAGGACCAAATCCTATAATGGCTCAGCTAAGTTTATTAAAACTTAATAAACAATATGTTGTTGATACTCTGGAACTGGAGCTGTAA 1281 0.4325 MAGQCSNEGSSTGNILAECSDSTVQLNIKTLDSRIYSFQVDKNMPVSLFKEKIASEIGVPVSQQRLIFRGKVLKDEHVLSEYHIENGDTLHLVERQPNQSQASGTSADESTGTSGNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTINGPNAMQTSSIMMRYHVVVRVVYQAHPGNETEGMHAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPVAAGAIPLPSLNAPIPDSLNTLLEFMNRMEQTLTQNGHQSNLSPANTGDQRVELPINSQGLPTLEALITVLHHAERLLGGQAVAALSHIAGRLEREGGSADPRIRGQVQSESVQIGLAMQHLGALLLELGRTMLTLRMGQASAEAVVNAGPAVYISPSGPNPIMAQLSLLKLNKQYVVDTLELEL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02078 426 ProSitePatterns Ubiquitin domain signature. 50 75 IPR019954 -
Spst8g02078 426 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Spst8g02078 426 SUPERFAMILY Ubiquitin-like 16 98 IPR029071 -
Spst8g02078 426 MobiDBLite consensus disorder prediction 96 129 - -
Spst8g02078 426 MobiDBLite consensus disorder prediction 203 228 - -
Spst8g02078 426 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 11 407 - -
Spst8g02078 426 MobiDBLite consensus disorder prediction 96 121 - -
Spst8g02078 426 SMART ubq_7 24 95 IPR000626 GO:0005515
Spst8g02078 426 PRINTS Ubiquitin signature 34 54 IPR019956 -
Spst8g02078 426 PRINTS Ubiquitin signature 55 75 IPR019956 -
Spst8g02078 426 PRINTS Ubiquitin signature 76 97 IPR019956 -
Spst8g02078 426 Gene3D - 14 108 - -
Spst8g02078 426 CDD Ubl_ubiquitin_like 26 93 - -
Spst8g02078 426 FunFam Large proline-rich protein BAG6 16 109 - -
Spst8g02078 426 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Spst8g02078 426 MobiDBLite consensus disorder prediction 207 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02078 Spst-Chr8 28782082 28785678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02078 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.278 2.64e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02078 - - pvu:PHAVU_001G0014001 677.552