LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g02064	ATGCATTTGGTTAATTTTTGCGTTGTCTGGGGCGAGAGAGGGGCAAGTTGGGGGTGGTGGAAGAGCAGGGAAGCAAAAGCAATGGAGTTACACCACTCCCTTTTCTCTGCTCAGTCCTCGCCGTATGTGCAGGGAATGAGCTTAATTTTGCGTGATGGAAAAGAAATACTACTTCAGGCGTTTAATTGGGAGTCTCACAAATACAACTGGTGGAATAATTTAGAAACCAAAGTTCCTGACATTGCTAAATCCGGATTTACATCAGTGTGGTTGCCACCACCAACTCACTCATTTTCACCTGAAGGTTACACCCCGCAGAACCTTTACTCTCTTAACAGCAATTATGGTTCTGAGCGTCAGCTAAAAGCTTTACTTCAAAAGATGAAGCAGCATAAAGTCAGAGCAATGGCCGACATAGTTATCAATCATCGTACTGGGACCACTCAAGGACGTGGAGGAATGTATAATCGTTTTGATGGAATTCCATTAGCCTGGGATGAACGTGCAGTGACAGCATGTACTGGGGGACTGGGTAATAAAAGCACAGGTGCTGTTTTTCATGGGTTTCCAAACATTGACCACACTCAAGACTTTGTAAGAAAGGATATCATAGGCTGGCTCCGTTGGCTGCGTCATGAAGTAGGCTTTCAAGATTTTCGATTTGATTTTGCAAAAGGGTTTGCAGCAAAATATGTGAAAGAATATATTGAAGGTGCAAAGCCATTGTTCTCTGTCGGAGAGTATTGGGATACTTGCAACTATAAGGGTTCTAGTTTGGACTATAACCAAGATAGTCATAGGCAACGAATAATCAATTGGATAGATGGCACTGGACAACTTTCAACCGCATTTGACTTTACAACAAAAGGAATTCTTCAGGAAGCTGTCAAGGGAGAATTTTGGCGCCTGCGTGATGCTCAAGGAAAGCCTCCAGGTGTGATCGGGTGGTGGCCATCAAGATCTGTCACATTCATAGACAATCATGATACAGGCTCAACTCAGGCTCATTGGCCATTCCCGAAAGACCATATTATGGAGGGGTATGCATATATCTTAACTCATCCTGGAATACCAACAGTTTTCTATGATCACTTCTATGACTGGGGAAATTCAATTCGGGATCAGATTGTGAAGTTGATTGATGTTCGCAAGCGTCATAATATTCAAAGTAGAACACCTATGAGGATTGTGGAGGCCAAACACGACCTTTACTCTGCAATAATTGGAGAGAAAGTGTGCATGAAGATTGGGAGTGGTTCATGGTACCCCTCAGGAAGGGAATGGACATTGTCAACTTCTGGCCACAATTACGCAGTGTGGCATAAGCAGTGA	1332	0.4347	MHLVNFCVVWGERGASWGWWKSREAKAMELHHSLFSAQSSPYVQGMSLILRDGKEILLQAFNWESHKYNWWNNLETKVPDIAKSGFTSVWLPPPTHSFSPEGYTPQNLYSLNSNYGSERQLKALLQKMKQHKVRAMADIVINHRTGTTQGRGGMYNRFDGIPLAWDERAVTACTGGLGNKSTGAVFHGFPNIDHTQDFVRKDIIGWLRWLRHEVGFQDFRFDFAKGFAAKYVKEYIEGAKPLFSVGEYWDTCNYKGSSLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGEFWRLRDAQGKPPGVIGWWPSRSVTFIDNHDTGSTQAHWPFPKDHIMEGYAYILTHPGIPTVFYDHFYDWGNSIRDQIVKLIDVRKRHNIQSRTPMRIVEAKHDLYSAIIGEKVCMKIGSGSWYPSGREWTLSTSGHNYAVWHKQ	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g02064	443	Pfam	Alpha amylase, catalytic domain	77	145	IPR006047	GO:0005975
	Spst8g02064	443	SUPERFAMILY	(Trans)glycosidases	61	373	IPR017853	-
	Spst8g02064	443	CDD	AmyAc_arch_bac_plant_AmyA	56	391	-	-
	Spst8g02064	443	SUPERFAMILY	Glycosyl hydrolase domain	390	442	-	-
	Spst8g02064	443	Gene3D	Glycosidases	55	387	-	-
	Spst8g02064	443	PANTHER	ALPHA-AMYLASE	42	441	-	-
	Spst8g02064	443	SMART	aamy	55	395	IPR006047	GO:0005975
	Spst8g02064	443	Gene3D	-	388	442	IPR013780	-
	Spst8g02064	443	SMART	alpha-amyl_c2	384	442	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Spst8g02064	443	PIRSF	Alpha-amylase_plant	31	443	IPR013775	GO:0004556\|GO:0005509\|GO:0005975
	Spst8g02064	443	Pfam	Alpha-amylase C-terminal beta-sheet domain	385	441	IPR012850	GO:0004556\|GO:0005509\|GO:0005975
	Spst8g02064	443	PRINTS	Alpha-amylase signature	216	227	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Spst8g02064	443	PRINTS	Alpha-amylase signature	132	143	IPR006046	GO:0004556\|GO:0005975\|GO:0043169
	Spst8g02064	443	PRINTS	Alpha-amylase signature	319	331	IPR006046	GO:0004556\|GO:0005975\|GO:0043169

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g02064	Spst-Chr8	28620365	28624916	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst8g02064	49	442	Glycoside Hydrolase	AT1G76130	77.157	0.0	671

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g02064	K01176		-	gmx:100813490	783.482

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g02064	8	28620365	28624916	Spst8g02064	8	28620365	28624916	ECH