Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02052 ATGAAGAAGACTAAGTCAATTGTTATTGTGGAGACATGGAGTCAATCAAGTAAAGTGTACAGGGAGTTAGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAACAAGAGTTATGGAAAAGAAATAGATGTGTGGAGCGCAGGAATCATTTTATACATCCTTTTAAGTGGAGTGCCTCCATTTTATGCTGAAAACGAGAGGGGCATATTTGATTCAATTTTGGAAGGCAAGCTCGATCTGGAGAGCGCACCGTGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAAGAAAATGTTGACTTATGATCCTAAGAAACGCATTACAGCTGCTGAAGCCCTTGAACACCCGTGGATGAAGGAGGGTGGTGAAGCATCTGACAAGCCTATAGACAATGCTGTTTTAACTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTTATAGCAGAAAATCTTTCAGGGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGACACTGATCGCAGTGGCACAATCACATTCGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTTAGTGAATATGAAATAAAGCAGCTAATGGAAGCTGCTGATGTTGACAACAGTGGAACTATTGACTATCAAGAGTTCATCACTGCCACTATAAACCGGCACAAATTGGAGAAGGAAGAGCATTTGTATAAGGCTTTTCAATACTTTGACAAGGATAACAGTGGATATATAACAAGAGAAGAGCTTAGACAAGCTTTGACTGAATATCAAATGGGAGATGAAGCAGCTATAGATGAAGTCCTCAATGATGTGGATACAGATAACGATGGGAAAATTAATTACCAGGAGTTTGTGGCTATGATGAGAAAGGGGATCCTGGATATTGATGAGAAAGAGAAACCACGATGA 942 0.4013 MKKTKSIVIVETWSQSSKVYRELVGSAYYVAPEVLNKSYGKEIDVWSAGIILYILLSGVPPFYAENERGIFDSILEGKLDLESAPWPSISAAAKDLIKKMLTYDPKKRITAAEALEHPWMKEGGEASDKPIDNAVLTRMKQFRAMNKMKKLALKVIAENLSGEEIKGLKQMFNNMDTDRSGTITFEELKSGLTKLGSKLSEYEIKQLMEAADVDNSGTIDYQEFITATINRHKLEKEEHLYKAFQYFDKDNSGYITREELRQALTEYQMGDEAAIDEVLNDVDTDNDGKINYQEFVAMMRKGILDIDEKEKPR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02052 313 ProSitePatterns EF-hand calcium-binding domain. 176 188 IPR018247 -
Spst8g02052 313 Pfam EF-hand domain pair 168 228 IPR002048 GO:0005509
Spst8g02052 313 Pfam EF-hand domain pair 237 300 IPR002048 GO:0005509
Spst8g02052 313 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 295 - -
Spst8g02052 313 ProSitePatterns EF-hand calcium-binding domain. 283 295 IPR018247 -
Spst8g02052 313 ProSiteProfiles Protein kinase domain profile. 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g02052 313 FunFam Calcium-dependent protein kinase SK5 30 125 - -
Spst8g02052 313 Pfam Protein kinase domain 14 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g02052 313 ProSiteProfiles EF-hand calcium-binding domain profile. 235 270 IPR002048 GO:0005509
Spst8g02052 313 FunFam Calcium-dependent protein kinase 1 128 303 - -
Spst8g02052 313 SMART serkin_6 1 120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g02052 313 SUPERFAMILY Protein kinase-like (PK-like) 18 142 IPR011009 -
Spst8g02052 313 ProSiteProfiles EF-hand calcium-binding domain profile. 163 198 IPR002048 GO:0005509
Spst8g02052 313 ProSiteProfiles EF-hand calcium-binding domain profile. 271 305 IPR002048 GO:0005509
Spst8g02052 313 ProSitePatterns EF-hand calcium-binding domain. 248 260 IPR018247 -
Spst8g02052 313 SMART efh_1 203 231 IPR002048 GO:0005509
Spst8g02052 313 SMART efh_1 239 267 IPR002048 GO:0005509
Spst8g02052 313 SMART efh_1 274 302 IPR002048 GO:0005509
Spst8g02052 313 SMART efh_1 167 195 IPR002048 GO:0005509
Spst8g02052 313 Gene3D - 127 302 - -
Spst8g02052 313 SUPERFAMILY EF-hand 159 300 IPR011992 -
Spst8g02052 313 Gene3D Transferase(Phosphotransferase) domain 1 6 124 - -
Spst8g02052 313 ProSitePatterns EF-hand calcium-binding domain. 212 224 IPR018247 -
Spst8g02052 313 ProSiteProfiles EF-hand calcium-binding domain profile. 199 234 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02052 Spst-Chr8 28369901 28372249 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02052 18 309 EF-hand Containing Proteins AT1G76040 76.027 5.78e-168 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Spst8g02052 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02052 K13412 - gmx:100816157 530.791