Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02047 ATGCTTGATTCCGTGCTTCTCGCGCTCTTCTTGCCCTGTTTGGGCATGAGCGCGGTTTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACCACTCACCACACCGATCCCGGGCTACCGACCAAGCCAGTCTCCGACGACGGCCTCTCCCCTTCCCAGCTCCAGAAGCTCCCCTCCATCACCGGAAAAGATCTTCACATGGGCTCCGAATGTGCTGTCTGCCTCGAAGACATCGCCACCGACCAACCGGCTCGACTTGTTCCCGGTTGCAACCACGCCTTTCATTTGGAATGCGCCGACACCTGGCTCTCCAAACACCCCCTCTGCCCTCTCTGCCGAGCCAAACTCGACCCCACGCTTTTCTCTTCCTCGGAAAATCCATGCTGA 387 0.584 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHTDPGLPTKPVSDDGLSPSQLQKLPSITGKDLHMGSECAVCLEDIATDQPARLVPGCNHAFHLECADTWLSKHPLCPLCRAKLDPTLFSSSENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02047 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 119 IPR013083 -
Spst8g02047 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Spst8g02047 128 SMART ring_2 71 112 IPR001841 -
Spst8g02047 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 124 - -
Spst8g02047 128 SUPERFAMILY RING/U-box 60 118 - -
Spst8g02047 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02047 Spst-Chr8 28333608 28333994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02047 1 128 C3H Transcription Factor Family AT5G42200 50.735 6.56e-44 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02047 K19037 - gmx:100817919 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02047 8 28333608 28333994 Spst8g02047 8 28333608 28333994 ECH
Spst8g02047 8 28333608 28333994 Spst9g00253 9 2343387 2343776 PCT