Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02028 ATGGGTTGTTTCTTCATACACATTGCTCTCATCTTGGTTCTCCTTTTCAAAGGTGCTTCATGTGCCACATTTACTCTAGTCAACAAATGTGATTACACGGTGTGGCCCGGGATTTTGGCCAATGCAGGGAGCTCCGGATTGGACTCAACCGGGTTTGAGCTCCGCCCCGGTGGTTCCCGGAGTTTTCAGACACCGCCCAACTGGTCGGGAAGATTCTGGGGCCGAACCGGATGCAACTTTGACCCGAATACCCAACAAGGTAGTTGCACAACAGGAGACTGTGGCTCTAATCAGGTCCAATGCAACGGTGGCGGGGCAAGCCCACCCGCCACGTTGGCGGAGTTCACAATCGGGTCGGGGTCCGGAACCCAGGATTTTTATGATGTGAGCCTCGTTGACGGTTACAACTTGCCGTTAATTGTGGACCCCAGTGGCGGATCGGGTACGTGCGGGTCCACCGGGTGCGTTGCGGACCTGAACCAACGGTGCCCCAACGAGTTACGCGTGGCGGATCGCCCCGCGTGTAGGAGCGCGTGCGAGGCGTTTCGGAGCCCCGAGTATTGCTGCAGCGGCGCGTACGCTTCACCCGCGACATGCAAGCCTTCTATTTACTCGCAGGTATTCAAATCCGCGTGTCCAAAATCGTATAGCTACGCGTACGACGACGCTACGAGTACGTTTACGTGTACGGGAGCTGATTATACCATTACGTTCTGCCCTTCAACCACAAGCCAAAAATCGGCAAGAGATTCACCACCTCCTCCGTCTGGAAGTGAGTCTGAAGCAGGAACAGGGGAGATGCCATTGATAGTTAATAATAATAATCCATGGTTTCCCAACTTTTTCACTGGACTCTCATCCAACCCTCATTCATGTCCCTTGCCATTGATTCTTACACTCACTCTGATAATCTTCTTCTCTATGCAACACTGA 933 0.5316 MGCFFIHIALILVLLFKGASCATFTLVNKCDYTVWPGILANAGSSGLDSTGFELRPGGSRSFQTPPNWSGRFWGRTGCNFDPNTQQGSCTTGDCGSNQVQCNGGGASPPATLAEFTIGSGSGTQDFYDVSLVDGYNLPLIVDPSGGSGTCGSTGCVADLNQRCPNELRVADRPACRSACEAFRSPEYCCSGAYASPATCKPSIYSQVFKSACPKSYSYAYDDATSTFTCTGADYTITFCPSTTSQKSARDSPPPPSGSESEAGTGEMPLIVNNNNPWFPNFFTGLSSNPHSCPLPLILTLTLIIFFSMQH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02028 310 Pfam Thaumatin family 28 240 IPR001938 -
Spst8g02028 310 MobiDBLite consensus disorder prediction 242 258 - -
Spst8g02028 310 Gene3D Thaumatin 22 240 IPR037176 -
Spst8g02028 310 PANTHER OS03G0233200 PROTEIN 9 240 IPR001938 -
Spst8g02028 310 FunFam THAUMATIN-LIKE PROTEIN 1 22 240 - -
Spst8g02028 310 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Spst8g02028 310 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Spst8g02028 310 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Spst8g02028 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Spst8g02028 310 MobiDBLite consensus disorder prediction 242 266 - -
Spst8g02028 310 SUPERFAMILY Osmotin, thaumatin-like protein 22 241 IPR037176 -
Spst8g02028 310 CDD TLP-PA 23 239 - -
Spst8g02028 310 ProSiteProfiles Thaumatin family profile. 22 240 IPR001938 -
Spst8g02028 310 SMART tha2 24 240 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02028 Spst-Chr8 27915835 27917321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02028 4 271 Receptor kinase-like Gene Family AT5G38280 45.520 1.48e-75 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02028 - - gmx:100786772 543.117