Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01971 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCAGAAGAAGAAGAGGATCAGAGAGAAGACAACAACACCAACAACAACAGTCAATTTTTGTTCAGAAACGTTAACGAGGAGATCTACAACACCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACAAACTACTACTCCTTCGGCGTGGGCCCTAGTCGCAGAAACAACAACAACAACAACAATAGCTCCTCCAACAACGTGAACGACGACGTTTCTGTCTCTTTCTCGGATGAGTCCAACCGGTTCGGCTTCACGGTGATGAGGCCCGGTGGCGGCTTGGGTGGCGGCGGAGGCGGCGGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACGCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGCGTTGCAGCAACAAAATCAACCACCACAGTTTCGTGGAGATCACTCGAAGCGACACAGAGAAAGTATCGAAGGTGCTGCAACTGGTGTTTCTGCTGCTGCTGGTTCTCTCGCTTGCGCTCCAGTTCCTATCACCACCATAGGGTTGGAGGTGGGGCAATTTCCACCGGAGCTAAACTCTCCAGCGGTGTTTCGGTGTGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTACGCATACCAAACCGCAGTGAACATTGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGCGGACGGTCCTTACGCCAGTGCAGCTTGCGAGGGTTCCTCCGGAGGCGGCGGCGGTGAAACTCGGCCACTCACTCTCATGGCCGCCACAACCGCCGCCACAACAACCGGAAACCCTTTTGACGCTTCACTCTACACGGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 1008 0.5377 MAGFFSLGGRHNKAEEEEDQREDNNTNNNSQFLFRNVNEEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNNNNNNSSSNNVNDDVSVSFSDESNRFGFTVMRPGGGLGGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQFRGDHSKRHRESIEGAATGVSAAAGSLACAPVPITTIGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGADGPYASAACEGSSGGGGGETRPLTLMAATTAATTTGNPFDASLYTAPMNAFMAGTQFFPPPRS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01971 335 NCBIfam putative zinc finger domain, LRP1 type 121 163 IPR006510 -
Spst8g01971 335 MobiDBLite consensus disorder prediction 168 182 - -
Spst8g01971 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 307 IPR007818 GO:0003700|GO:0006355
Spst8g01971 335 MobiDBLite consensus disorder prediction 71 91 - -
Spst8g01971 335 MobiDBLite consensus disorder prediction 1 32 - -
Spst8g01971 335 Pfam Domain of unknown function (DUF702) 119 273 - -
Spst8g01971 335 NCBIfam LRP1 C-terminal domain 224 271 IPR006511 -
Spst8g01971 335 MobiDBLite consensus disorder prediction 10 24 - -
Spst8g01971 335 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01971 Spst-Chr8 26652985 26654449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01971 1 334 C2H2 Transcription Factor Family AT1G19790 46.281 8.85e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst8g01971 DUF702 1.2e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01971 - - gmx:100794846 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01971 8 26652985 26654449 Spst9g00113 9 884696 886364 PCT