Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01965 ATGCTGAAATCAGGCATGGGAATTGGTGGGAGTAAGCAGATGAAAAAACATGTTAAGGGCACTTCCAGAAAGGGGTGCATGAAGGGAAAAGGAGGCCCTGAGAATGCCACTTGCACCTACAAAGGTGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCTGAGATCCGTGAGCCCAACCGTGGTGCACGCCTCTGGCTAGGCACATTTGAGACGGCCGGTGAGGCTGCCCGTGCCTATGATTCTGCAGCACGCAAGCTCTATGGATCTGATGCACAACTCAACCTCCCACCTCGTCCTGTGCCCATGAATCCCCATCCTCTACCACCTTACCTTCCTCCCAACCCTCAGATCCCCCAAATGCCACCACCACCACAGCCTCAAAACCCTCAGATTTTCCTTCCCTATGAACTTCTCAGTCTCTGTTCCTCTGATCTCATCAACAACCTCACCAACAACCCCAACATCATGACCAACCCCCTGGTCTCCATGCCCCCTGATCAGCATGCAATTGCTGATTCTGCGCCTGTGTACACCAGCGACTCTCTTGTCGGAATTCCCTATGAAACCAGCACCACCCCCATGGGGATTTACCCCTCCAACCCTGTGGAGATGGAGGGGAACATGCTTGGTCCTTTTTGGGGGTCAATCAACGACCTTCCTTACCCTTTGTTTGATGAGTCCATCTGGACCGAAGCTGCTATGTCTCTGGATTTCCCTGTCATACCAGATGCTGATGGAATTTATGGAGCTGAAACCTTTTATGAAGTGGGTCCTTGGGACTCTATGCAAACTCCTTGGTGCATGTAA 807 0.5204 MLKSGMGIGGSKQMKKHVKGTSRKGCMKGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETAGEAARAYDSAARKLYGSDAQLNLPPRPVPMNPHPLPPYLPPNPQIPQMPPPPQPQNPQIFLPYELLSLCSSDLINNLTNNPNIMTNPLVSMPPDQHAIADSAPVYTSDSLVGIPYETSTTPMGIYPSNPVEMEGNMLGPFWGSINDLPYPLFDESIWTEAAMSLDFPVIPDADGIYGAETFYEVGPWDSMQTPWCM 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01965 268 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Spst8g01965 268 MobiDBLite consensus disorder prediction 1 31 - -
Spst8g01965 268 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Spst8g01965 268 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Spst8g01965 268 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Spst8g01965 268 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Spst8g01965 268 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Spst8g01965 268 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 99 - -
Spst8g01965 268 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Spst8g01965 268 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Spst8g01965 268 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01965 Spst-Chr8 26377135 26377941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01965 10 96 AP2-EREBP Transcription Factor Family AT1G75490 77.011 3.85e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01965 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01965 - - pvu:PHAVU_001G010400g 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01965 8 26377135 26377941 Spst8g01965 8 26377135 26377941 ECH
Spst8g01965 8 26377135 26377941 Spst9g00329 9 3131579 3132340 PCT