Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01932 ATGCTGGAAGATTTCCGCACCAACAAGCAGAGAGAGTGGAGGTTTGAAAGCAGAATAATGAAGCTTGGTTTCTTTCTGTTCTTCCTAGTTCTCTACCTGATTCTTGAACCTGGGATCTTCTTGTTACCCCAAGTAGAAGCTGATGATCATGATGATGAGTTTGTGAAAGTAAGAGGAGTGCAGCTTATGTTGAATGGGAGACCCTACTATGCTAATGGTTATAATGCCTATTGGCTGATGTACATGGCCTCTGATCCATCTCAGAGAAACAAGGTCTCATCTGTGCTTCAAACAGCTGCAAACCATGGACTTAACATAGCTAGAACATGGGCTTTCAGTGATGGTGGATATAAGCCCCTTCAATACTCTCCTGGATCCTACAACGAGGACATGTTCCTGGGGCTGGACTTTGTAATATCAGAAGCCAGAAGGTATGGGACCAAGTTGGTGTTGTGTTTGGTGAATAACTATGATAACTTTGGAGGAAAGAAACAGTATGTGGAGTGGGCAAAGAGTGAGGGCCAGTCCATAGAATCTGAGGATGGTTTCTTCACAAACACTGTTGTCAAGGGATTCTACAAAAACCATATCAAGAGTGTGCTCACAAGACGTAACAACTTCACGGGAGTGGTTTACAAAGATGATCCAACCATAATGGCTTGGGAACTCATGAATGAAATTAGATGCCCTTCTGATGAATCAGGAAACACGGTTCAGGCTTGGATTACTGAAATGGCATCTTACTTGAAATCCATAGATGGAAACCATTTACTAGAAGCTGGTCTGGAGGGCTTCTATGGGGTGTCCAAGCAAGACTCTAATCCAAATTTCCATGTTGGAACAGATTTCATTGCAAACAACCAAATCCCTGGCATTGATTTTGCCACAATTCTTATTTTTCATGATAATGCTGAATTGGGCAAGGTTATGAGCAGGTTACCAGGATCAAGCAATGAAGAGCAAATCTTATTTTTGGTTCGTTGGCTGAACGACCACATAAAAGATGCAGAGAGTATTCAGAAGCCAGTTCTCTTTGCTGAGTTCGGGGTAGCAACAAAAAACATGAGCACTGACTCAACAACAGTAAGGGACCAATTTTTCAACTTGGTGTATTCTGCAATCTATTCATCAGCAAGTGATAGTGGCCCAGCAATTGGTGGCTTATTTTGGCAACTTCTAGCAGAAGGGATGGATTCTTTTAGAGATGGCTATGAAGTGCCCTTAGATGATACTTGCTCAACTGCTAATTTGATTGCTCAAGAGTCTCAAAAGCTAAACAGAATCAGGATGAAGAAATCCTTCAGAGTTAAGAATTCCAAGCAGTGGAATAAAGCTAGGGAAGTTAAAGACTCAGACAAATCTTGA 1365 0.4176 MLEDFRTNKQREWRFESRIMKLGFFLFFLVLYLILEPGIFLLPQVEADDHDDEFVKVRGVQLMLNGRPYYANGYNAYWLMYMASDPSQRNKVSSVLQTAANHGLNIARTWAFSDGGYKPLQYSPGSYNEDMFLGLDFVISEARRYGTKLVLCLVNNYDNFGGKKQYVEWAKSEGQSIESEDGFFTNTVVKGFYKNHIKSVLTRRNNFTGVVYKDDPTIMAWELMNEIRCPSDESGNTVQAWITEMASYLKSIDGNHLLEAGLEGFYGVSKQDSNPNFHVGTDFIANNQIPGIDFATILIFHDNAELGKVMSRLPGSSNEEQILFLVRWLNDHIKDAESIQKPVLFAEFGVATKNMSTDSTTVRDQFFNLVYSAIYSSASDSGPAIGGLFWQLLAEGMDSFRDGYEVPLDDTCSTANLIAQESQKLNRIRMKKSFRVKNSKQWNKAREVKDSDKS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01932 454 FunFam Mannan endo-1,4-beta-mannosidase 6 51 429 - -
Spst8g01932 454 SUPERFAMILY (Trans)glycosidases 54 416 IPR017853 -
Spst8g01932 454 Pfam Cellulase (glycosyl hydrolase family 5) 87 363 IPR001547 GO:0004553|GO:0071704
Spst8g01932 454 PANTHER - 25 448 IPR045053 GO:0004553
Spst8g01932 454 Gene3D Glycosidases 50 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01932 Spst-Chr8 25059543 25064051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01932 18 446 Glycoside Hydrolase AT5G66460 55.889 1.31e-165 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01932 K19355 - gmx:100817974 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01932 8 25059543 25064051 Spst8g01932 8 25059543 25064051 ECH
Spst8g01932 8 25059543 25064051 Spst9g00358 9 3282240 3285114 PCT