Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01912 ATGACGACCGGAGGAGGAGACCGCGGCAGGGGCTCCGCAGTGGGAGTTCAGATCCAGCAGCAGAACCGAATGGCGCTCCCTGATTTCCTCCAGAGCGTCAATCTCAAGTATGTGAAATTAGGTTATCACTACTTGATCTCCAACCTCCTAACCCTATTTCTAGTTCCTTTGATCCTCGTCACGATAATCCAGGTCTCCCAAACCACCGACATCCACCACCTTCGCCACCTCTGGCTCCATCTCCAGTACAACCTAATCACCATCCTCACCTGCTCTGCTTTCCTCGTCTTCGGCCTCACTCTCTACGTGGTCACGCGCCCACGCTCCGTCTACCTCCTCGACTCCGCCTGCTTCCGCCCCGCCGACCACCTCAAAGCCCCCTTCCGGAGTTTCATGGACCACTCACGCCTCACGGGAGACTTCGAGGAGTCTTCGTTGGAGTTCCAGCGCAAGATCCTCGAACGCTCTGGTCTCGGAGAGGAGACCTACGTCCCCGAAGCCATGCACTCTATTCCGCCTCAGCCGTCCATGGCCGCGGCCAGGGCGGAGGCGGAGCAAGTCATGTTTGGTGCCTTGGATAATCTCTTCCAAAACACCAACGTTAAACCTAAGGATATTGGTATTCTTATTGTGAATTGTAGCTTGTTTAACCCTACGCCCTCACTCTCTGCCATGATTGTTAATAAGTACAAATTGAGGGGGAACATAAGGAGCTTTAATTTGGGAGGAATGGGGTGCAGTGCTGGGGTTATTGCTGTTGATCTTGCTAAGGACCTTTTGCAGGTTCATAGGAACACTTTTGCTGTGGTTGTTAGCACTGAGAACATTACTCAGAATTGGTACTTTGGGAACAAGAAATCCATGCTCATTCCCAATTGCCTCTTCCGGGTCGGCTGCTCGGCGCTGCTGCTGTCCAACAAGCCGGCCGACCGGAGGCGGGCGAAGTACCGGCTTGTCCATGTTGTAAGGACTCACCGCGGCACGGATGACAAGGCGTTCCGGTGTGTTTACCAGGAGCAGGATGATGCAGGGAAGACTGGTGTTTCTTTGTCTAAGGATTTGATGGCAATTGCTGGTGGAGCATTGAAAACAAACATCACCACCCTTGGTCCTTTGGTGCTGCCAATTAGTGAGCAGCTTCTGTTTTTTGTGACTTTGCTGATGAAGAAGTTGTTCAAGGCTGATGTGAAGCCTTACATACCGGATTTCAAGCTTGCTTTTGATCATTTTTGCATACATGCTGGAGGCAGGGCTGTGATTGATGAGCTGGAGAAGAACTTGCAACTGCGTCCTGAGCATGTGGAGGCTTCTAGGATGACCCTGCACCGGTTTGGGAACACTTCCTCTAGCTCCATTTGGTATGAATTGGCTTACATTGAAGCCAAAGGGAGGGTGAAGAAGGGTAACAGGATTTGGCAAATTGCATTTGGAAGTGGTTTCAAATGTAACAGTGCTGTTTGGCAGGCACTGAGAAATATTAAGCCTTCTCCTAATGGACCATGGGAAGATTGCATTGATAAGTATCCTATGGAAATAGTCACATAG 1545 0.5074 MTTGGGDRGRGSAVGVQIQQQNRMALPDFLQSVNLKYVKLGYHYLISNLLTLFLVPLILVTIIQVSQTTDIHHLRHLWLHLQYNLITILTCSAFLVFGLTLYVVTRPRSVYLLDSACFRPADHLKAPFRSFMDHSRLTGDFEESSLEFQRKILERSGLGEETYVPEAMHSIPPQPSMAAARAEAEQVMFGALDNLFQNTNVKPKDIGILIVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDLLQVHRNTFAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSALLLSNKPADRRRAKYRLVHVVRTHRGTDDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFVTLLMKKLFKADVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLRPEHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRVKKGNRIWQIAFGSGFKCNSAVWQALRNIKPSPNGPWEDCIDKYPMEIVT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01912 514 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 407 488 IPR013747 -
Spst8g01912 514 SUPERFAMILY Thiolase-like 319 488 IPR016039 GO:0016746
Spst8g01912 514 CDD CHS_like 92 487 - -
Spst8g01912 514 SUPERFAMILY Thiolase-like 96 314 IPR016039 GO:0016746
Spst8g01912 514 Pfam FAE1/Type III polyketide synthase-like protein 102 391 IPR013601 GO:0006633|GO:0016020|GO:0016747
Spst8g01912 514 Gene3D - 128 489 IPR016039 GO:0016746
Spst8g01912 514 FunFam 3-ketoacyl-CoA synthase 120 489 - -
Spst8g01912 514 PANTHER 3-KETOACYL-COA SYNTHASE 79 511 IPR012392 GO:0006633|GO:0016020|GO:0016747
Spst8g01912 514 PIRSF Very_long_ch_3-ktacl-CoA_syn 28 514 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01912 Spst-Chr8 24448590 24450134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01912 20 512 Miscellaneous Gene Families AT1G19440 82.150 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01912 K15397 - gmx:100816382 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01912 8 24448590 24450134 Spst8g01912 8 24448590 24450134 ECH