Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01898 ATGTTTCATAGTTGGAGCAATTCTCCTCAACAAGGTCGAGAAAGCAACGAGCTTTATACTGAATCAAAGATCAAGGAGCTGAAGGGTGCAATTGAACCCTTATCAGGGCACAGTTTGATGTATTGCACTGACGCATGTTTGAAGAGATATTTGGAAGCTCGGAACTGGAATGTGGACAAGTCCAAGAAGATGTTGGAGGAGACACTCAAGTGGAGATCAATCTATAAGCCAGAGGAAATTCGCTGGCATGAGGTTGCAATGGAAGGGGAGACTGGAAAATTGTATAGAGCAAGTTTTCGTGATAGACAAGGAAGAAGTGTTCTTATTTTGAGGCCAGGAATGCAGAACACTACTTCAATGGAGAATCAGATGCGGCATTTTGTTTATATTTTGGAAAACGCCTTGCTTGACCTTCCACCGGGTCAAGAACAAATGGCATGGTTAATAGACTTCACTGGGTGGTCAATAACCAACAATGTGCCCTTGAAATCAGCCAGAGAGACCATCAACATTTTGCAGAACTATTACCCTGAGAGGCTTGCCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCCTTTTGGAAGATAGTTAAGTACTTCTTGGATAACAAGACATTTCAGAAGGTGAAGTTTGTGTACCCGAAGAACAAAGATAGTGTAGAGCTCATGAAGTCCTATTTTGATGAGGAAAACCTTCCCAAAGAACTAGGTGGAAAAAGCACAATGCATTATAACCATGAGGAGTTCTCCAGATTAATGGTTCAGGATGATTTAAAATGTGCAGCATTTTGGGGATCTGATGAGAAGCTCTCCAACCACATTCCTAATGGGCATTCTGCAGCAATTTTCAATGAAACCTCACCTGAGGCATGTTAA 882 0.4184 MFHSWSNSPQQGRESNELYTESKIKELKGAIEPLSGHSLMYCTDACLKRYLEARNWNVDKSKKMLEETLKWRSIYKPEEIRWHEVAMEGETGKLYRASFRDRQGRSVLILRPGMQNTTSMENQMRHFVYILENALLDLPPGQEQMAWLIDFTGWSITNNVPLKSARETINILQNYYPERLAIAFLYNPPRVFEAFWKIVKYFLDNKTFQKVKFVYPKNKDSVELMKSYFDEENLPKELGGKSTMHYNHEEFSRLMVQDDLKCAAFWGSDEKLSNHIPNGHSAAIFNETSPEAC 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01898 293 SMART CRAL_TRIO_N_2 43 68 IPR011074 -
Spst8g01898 293 Pfam CRAL/TRIO, N-terminal domain 28 67 IPR011074 -
Spst8g01898 293 Pfam CRAL/TRIO domain 100 240 IPR001251 -
Spst8g01898 293 Gene3D - 6 271 IPR036865 -
Spst8g01898 293 FunFam Phosphatidylinositol transfer protein 3 3 275 - -
Spst8g01898 293 SUPERFAMILY CRAL/TRIO domain 82 257 IPR036865 -
Spst8g01898 293 PANTHER GH16843P 14 272 - -
Spst8g01898 293 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 246 IPR001251 -
Spst8g01898 293 CDD SEC14 100 241 IPR001251 -
Spst8g01898 293 SMART sec14_4 88 243 IPR001251 -
Spst8g01898 293 SUPERFAMILY CRAL/TRIO N-terminal domain 17 84 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01898 Spst-Chr8 24026911 24028673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01898 47 235 Acyl Lipid Metabolism Gene Families AT1G55840 28.638 1.80e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01898 K26544 - gmx:100790867 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01898 8 24026911 24028673 Spst8g01898 8 24026911 24028673 ECH