Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01870 ATGGACATCAAGCGTGGGCTGCAAGAGTCCAGGCGAGATCCTGTGGTGTTCCAGAACTGCATCATGGTTGTGAGGAAGCCAAATGACAACCAGCAGAACATGGTGACAACACAAGGGAGAGAGGACAAGCAACAAGCCACTGGAATTGTGCTCCAGAAGTGCACAATCAAACCTGATGACAAACTGGTCCCAGTAAAGGACAAGATCAGGAGCTACCTTGGAAGGCCATGGAAGGAGTTCTCAAGAACCATTGTGATGGAATCAGAAATAGGTGACTTCATTCACCCTGATGGATGGACAGCTTGGAATGGAGACTTTGCTCTCAAAACATTGTACTATGCTGAGTATGGCAACACAGGACCTGGTGCCACCACCAATATGCGAC 385 0.4857 MDIKRGLQESRRDPVVFQNCIMVVRKPNDNQQNMVTTQGREDKQQATGIVLQKCTIKPDDKLVPVKDKIRSYLGRPWKEFSRTIVMESEIGDFIHPDGWTAWNGDFALKTLYYAEYGNTGPGATTNMR 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01870 128 SUPERFAMILY Pectin lyase-like 14 126 IPR011050 -
Spst8g01870 128 Pfam Pectinesterase 15 128 IPR000070 GO:0030599|GO:0042545
Spst8g01870 128 Gene3D - 11 128 IPR012334 -
Spst8g01870 128 PANTHER PECTINESTERASE 15 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01870 Spst-Chr8 23158986 23159494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01870 15 128 Carbohydrate Esterase AT1G02810 59.649 3.92e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01870 - - gmx:100784679 214.157