Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01869 ATGTTTTTGTATGCCGCTAACTTGTGTTCTGGAAAGAAGAATCAGGAAGTGGATACCCTTAACCATTCAAAACCATATACTGAATATGCTCATCCTCTTGTGGAAACTCTTAAATCTGAGTTGCAAAGAGTGAGAGATGAGAATAACGCTCTAAGACTGATGTTTGAAGTTCTAAGCAGCAAGTACACTAAGCTTGAGTCTTATCTTCAAGAGATAGACAAAAAGCCAGATAAGGGCATAAGTTCAAATGAAATAGAGTCAGTGCCTACTTTTGATGCAAACAAGAGATCGAGACTAGAGTTTCCTACTGCAAAAAAACCACTTCAAATCTTTGTCAAAACACACCCCAGGGATGATAGTTTGATAGTAAAAGATGGATATCACTGGAGGAAGTATGGACAGAAGGTCACCAAAGACAATGCTTCTCCCAGAGCTTACTTCAGGTGCTCCATGGCTCCCATTTGCCCCGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAATCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCGCTTCATGAGTCATCTTCATCCGCACCAAACGGCATATCAGTGGCTAATCAGTTGCCTCTAACAAGCATAGCAAATGACAAAGAAGCGATGAACATTGACTTGGCTCTTTCTGGGTGGTCTCAAACAGATAGGAGACATAGTGAAGACGTAATGCACCAGCATAACTATGACAGCACCCTCAAAGTTGAAGAGTATGTAAGTTCTCTAATCAAAGATCCTGAGTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCCAGCACAAGCAGCAAGATCTAAACCTCAATTTGAATATTCCAGAAGAGTGA 867 0.4152 MFLYAANLCSGKKNQEVDTLNHSKPYTEYAHPLVETLKSELQRVRDENNALRLMFEVLSSKYTKLESYLQEIDKKPDKGISSNEIESVPTFDANKRSRLEFPTAKKPLQIFVKTHPRDDSLIVKDGYHWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHESSSSAPNGISVANQLPLTSIANDKEAMNIDLALSGWSQTDRRHSEDVMHQHNYDSTLKVEEYVSSLIKDPEFTMSLAEAVARTITGQHKQQDLNLNLNIPEE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01869 288 SMART WRKY_cls 123 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01869 288 ProSiteProfiles WRKY domain profile. 118 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01869 288 Gene3D WRKY domain 109 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01869 288 Pfam WRKY DNA -binding domain 124 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01869 288 SUPERFAMILY WRKY DNA-binding domain 119 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01869 288 Coils Coil 34 54 - -
Spst8g01869 288 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 275 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01869 Spst-Chr8 23079694 23081322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01869 32 278 WRKY Transcription Factor Family AT1G80840 35.740 1.42e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g01869 WRKY 5.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01869 - - gmx:100170679 404.445