Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01844 ATGGAATCCGAGGATTTGGTGAAACGGGAATTGGAGGAATTGCAGAAACAATTGGGGAAGAAGCAGAAGTTTGAAGCCTCTGTTTCGTCCCTCAAATCCCTTCTCCAATGCTCATATCCTTCAGCTTCTCCATCGCTTCGCAAATCCTTTTATTCAGTTATATGCCGAGTTGCCACTGTGTTGAAGACCAGATATACAGCACCAGGTTTCTGGAATGCTGGATTGGGTCTTTTTGAGCTGGCTCATTTGCTTTATTCTGAACCTTCTGAGAGGGAACACTTGAAGGCTTGCATTTCTCAGGCCAAGGAACATTTGCATCTGGAAGACAACCCATCACTACAAGCTTCACAACTTGCAGATGATCAGGCACACAGAGGATATCTTTTTGAGGGGCACCTTACAGTTGATCCTGAACCACCACAACCTCAATGGTTGGTGCAGTCAAACCTTTTGACAACAGCTGCTACACTCTTTGCTGCTGAATCCTCTCAAGCTTCTGCAGCAAATGAAACCACCCCAGAGGATGCCGCAAATATGCTTCAAGATCTTATAAATAGTTTGGAAGAAGTTGTGCCCTTGATGGTGGATGAAGGTACTGTAGCTCCAAGAGCCCCTCCTGCCAGTAAAGAGGTTGTGGCAAAACTTCCAGTCATTACTCTCACAGAGGAAATTCTGGCTACTTTGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAGAACTTGGTTTTGAATGACAAAATGCAAGAGTTGCCATGCAAACACACATTCCACCCACCATGTTTAAAGCCATGGCTGGATGAGCACAATTCCTGTCCCATCTGTCGTTATGAGCTGCGAACTGATGATCATGCCTATGAGAGCTGGAAGGAGCGAGAAAAGGAAGCTGAAGAGGAGAGGAAAGGTGCTGAAAATGCAATTCGAGGTGGTGAATATATGTATGTTTAA 945 0.454 MESEDLVKRELEELQKQLGKKQKFEASVSSLKSLLQCSYPSASPSLRKSFYSVICRVATVLKTRYTAPGFWNAGLGLFELAHLLYSEPSEREHLKACISQAKEHLHLEDNPSLQASQLADDQAHRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQASAANETTPEDAANMLQDLINSLEEVVPLMVDEGTVAPRAPPASKEVVAKLPVITLTEEILATLGKDAECAICRENLVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELRTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01844 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 281 IPR013083 -
Spst8g01844 314 SMART ring_2 234 274 IPR001841 -
Spst8g01844 314 CDD RING-H2_RNF126-like 233 275 - -
Spst8g01844 314 SUPERFAMILY RING/U-box 228 281 - -
Spst8g01844 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 278 - -
Spst8g01844 314 Coils Coil 285 305 - -
Spst8g01844 314 Pfam Ring finger domain 233 275 IPR001841 -
Spst8g01844 314 FunFam E3 ubiquitin-protein ligase RNF181 195 281 - -
Spst8g01844 314 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01844 Spst-Chr8 22480659 22484196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01844 7 314 C3H Transcription Factor Family AT5G20910 65.260 3.97e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01844 K16274 - gmx:100798732 533.102