Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01837 ATGACTAGGGTGGATTCTTCTTCTTCTTCTTCTCTTACTTCTTGCAATGACTCATTCTCGACAAACAATTCTAGTGGGTGTAAGATGTACAAAGGAGTGAGAAAGAGAAAATGGGGCAAATGGGTGTCCGAAATTAGGCTTCCCAATAGCCGTGAGCGTATATGGTTGGGGTCTTATGATACTCAGGAGAAGGCAGCGAGGGCTTTCGATGCAGCCCTCTTCTGCCTTCGAGGCAAGGATGCCAGTTTTAACTTCTCGGACACACCTCACCACCTGGAAATCGACTCGATCAAGACTCCGCGAAGTCATCAAGACATCCAAGAGATGGCAGCAAAATTCGCCAAGGAGATGGGGAGTTTGACAGGAGAAGAAGATGGAGAACATGGAGCTCAAAGTGAGTCCGAGTCCAAGTCCAACCACTCCACAGACACCAACACAAACACAAGCTTTCCTATTTTTGATGGTGGGACAAATCATCACGTGCAAGTAGACTTAGAGACCATGGATTGGACATTTATGAACATGTTGGATGACTTAAATGGTGGCTCCGATTTTGACCTCTATTTTGGGGCAGACAAGGGTGAGTTTTTCTGTCCCACAACACAAACTCCACTGCTCTTTCACCATGTGGATGAGATTGAAGGTGGTAATGATCATGATCATGATGCCTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 708 0.4534 MTRVDSSSSSSLTSCNDSFSTNNSSGCKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALFCLRGKDASFNFSDTPHHLEIDSIKTPRSHQDIQEMAAKFAKEMGSLTGEEDGEHGAQSESESKSNHSTDTNTNTSFPIFDGGTNHHVQVDLETMDWTFMNMLDDLNGGSDFDLYFGADKGEFFCPTTQTPLLFHHVDEIEGGNDHDHDAFSNHSFLWSWNF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01837 235 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Spst8g01837 235 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Spst8g01837 235 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Spst8g01837 235 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Spst8g01837 235 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Spst8g01837 235 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Spst8g01837 235 MobiDBLite consensus disorder prediction 135 153 - -
Spst8g01837 235 MobiDBLite consensus disorder prediction 1 22 - -
Spst8g01837 235 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Spst8g01837 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 174 - -
Spst8g01837 235 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Spst8g01837 235 MobiDBLite consensus disorder prediction 121 153 - -
Spst8g01837 235 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01837 Spst-Chr8 22242632 22243339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01837 23 188 AP2-EREBP Transcription Factor Family AT1G74930 49.102 1.60e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01837 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01837 - - vum:124843463 351.673