Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01830 ATGGAACAGCAACACCACCAAAAACAAAACAGCATCCTATGCAAATACACTGTACACCAGAGTGTCAAGAAAAAACACACAAAACTAAAAACAGCTTCGCTTCCTCCCAAAGTCATTTCTATATTCGTAACCGATCCTTACGCCACAGATTCATCCAGCGACGATGAAAACACCTCTCGCACCAGAGTCAAGCGTTACGTCAACAGAATTGAAATTCAACCTGCGGGCAAAACAGTGGCTTCTAAAAAGAGAAACGCAGGAGAAATCACTACTTTTCGGCCGTCGCCTGCGGCGATAATAGCGGCGACCAAGCTGTCAGCTACCTGGCGCGTGAAGAAGTACCGCGGTGTGCGGATGCGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGATCCTATAAACCGCAATAGGATCTGGCTCGGAACCTTTGACACTGCCGTAGAAGCTGCGTTGGTATACGACAATGCCGCGGTTGCGTTTCGCGGTCCTAACGCGTTAACGAACTTCACATCGAAGGAGTCGACGGAAAAAGAAAAAGCCTCTGCCGGAAAATTAGAAATGAATGTGGTGGTGAAGCCGGAGACCGAAGTGTCCGGTTACGACTCAACTGACGAGAGCTGTCACAACCTTTCGTCGCCCACATCTGTTCTCCGATTCAACGAGCAGGAGAAATCGGAACAACCCTTTGCCAGTCAAAGTCACTTCATGGAAGAGTGTGAAGGCGAGACGGTGTCGTTTCACGAAAGTAGCGATTTTTGGCCACGGGATATGTCATTGGATGACGTGTTTAACTTTCCGGCTATGTACGACGAACCTGTTTCGCATATATTTGACGAAACGATACCGTTTTTTGTTAGTGACTGTTTGGGTGGTGTTAAGGATTCTGAAGAAAAGTGGTCGTCGTCATCGTCATTGTGCCAAGTGGACGATTACTTCGAAGACATTTTGTTAGGCTCAGATCCTCTGGCGGTGGTGACTACTCACCCATTTATCCCTCGTTATTATCTTAATTCAAATCTTAAACTCGTGCAAGAGCATGATGAATCGAAAAGTGAACAGGAGACAAGACAGGTGAATGATTATGTCACAATTCGCAGAACATGGAGATACTTCATACAGGATGTGACTGTTCCACGCAGAGAGAAGTGCAGAAAATTCCCAATATCTCTGCAAGTTGCAGAGTTTCACGACCTAGAACCATCAAGCCCAGCTGTTGGCCTCTCACGATTGGGCCGTCCCTACCCACTCCGCAAGTCCACAGAAACTGTCTTTGAGGGCAAAAGGGGAAAGGTAGAAAGAGTAAAGAGGGAAAAGGAGGTGATGGAAGCACGTGAAATCCATATGGCAAGGCCTGCAATGCAAGTTTAA 1368 0.4744 MEQQHHQKQNSILCKYTVHQSVKKKHTKLKTASLPPKVISIFVTDPYATDSSSDDENTSRTRVKRYVNRIEIQPAGKTVASKKRNAGEITTFRPSPAAIIAATKLSATWRVKKYRGVRMRPWGKWAAEIRDPINRNRIWLGTFDTAVEAALVYDNAAVAFRGPNALTNFTSKESTEKEKASAGKLEMNVVVKPETEVSGYDSTDESCHNLSSPTSVLRFNEQEKSEQPFASQSHFMEECEGETVSFHESSDFWPRDMSLDDVFNFPAMYDEPVSHIFDETIPFFVSDCLGGVKDSEEKWSSSSSLCQVDDYFEDILLGSDPLAVVTTHPFIPRYYLNSNLKLVQEHDESKSEQETRQVNDYVTIRRTWRYFIQDVTVPRREKCRKFPISLQVAEFHDLEPSSPAVGLSRLGRPYPLRKSTETVFEGKRGKVERVKREKEVMEAREIHMARPAMQV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01830 455 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Spst8g01830 455 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Spst8g01830 455 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 282 - -
Spst8g01830 455 Gene3D AP2/ERF domain 112 171 IPR036955 GO:0003700|GO:0006355
Spst8g01830 455 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Spst8g01830 455 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Spst8g01830 455 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Spst8g01830 455 CDD AP2 112 169 IPR001471 GO:0003700|GO:0006355
Spst8g01830 455 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Spst8g01830 455 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01830 Spst-Chr8 22086650 22094055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01830 14 317 AP2-EREBP Transcription Factor Family AT4G27950 39.359 1.65e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst8g01830 AP2 3.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01830 - - gmx:100801199 361.303