Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01820 ATGGAATCCCAGAAAAGTCCTTTAATAGATGACAGCTTATGTGCTATTTTCCAAGATACTGAGTTTGGGGACACCCACTTTGGTGGAGGGGACCTCTTTTCCATTTTGGATAGCCTAGAAAACTTCAACGATTTTCCTCCCATCTACAATGAAGCAGTTATCAGCCCAACCTCAAAACAAAATGAGCAAAACTCAACAGTAGTGTCCCAAAAAGTCTCAGTATCTTCCAGTGTTCCACAAGATTCTGAAACTGAGCCTGAAATCTCACCCAAAAGCAAGAGAAAAAAACTCTGCCCCACCTTGCTAGAAGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAGCAAATGAATGAGAACTTGTCCGTATTGAGGTCACTTATGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCGATAATTGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGCTGCTACAATGCTTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCCCAAGACCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTTCCCATTAGTCCAAGGACTCCACAACCAGGTAGCCCTTACATGCCCAGGTTGCAGCCAGGTTACATTTCCCCAACCATAGCCAACTCTCCCACTTCTTCCGCTTCTTCTTCCATCAACGATAATATCAACGAGCTTGTTGCCAATTCCAAGTCTGTTATTGCTGATGTTGAGGTCAAGTTTTCAGGTCCACATGTTCTTCTGAAGACAGTTTCACCACCAATTCCTGGACAGACTCTGAGAATAGTTTCCGCCCTCGAAGACCTAGCACTCGAAATCCTCCATGTGAACATAAGCACTGCTGATGAAACCATGATAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 1005 0.4388 MESQKSPLIDDSLCAIFQDTEFGDTHFGGGDLFSILDSLENFNDFPPIYNEAVISPTSKQNEQNSTVVSQKVSVSSSVPQDSETEPEISPKSKRKKLCPTLLEEPQKVSHITVERNRRKQMNENLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQLLQCLEAKKQRKVYSDVLSPRLVSSPRPSPLSPRKPPLSPRINLPISPRTPQPGSPYMPRLQPGYISPTIANSPTSSASSSINDNINELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQTLRIVSALEDLALEILHVNISTADETMINSFTIKIGIECQLSAEELAQQIQQTFC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01820 334 MobiDBLite consensus disorder prediction 178 214 - -
Spst8g01820 334 MobiDBLite consensus disorder prediction 56 95 - -
Spst8g01820 334 MobiDBLite consensus disorder prediction 184 214 - -
Spst8g01820 334 Pfam Helix-loop-helix DNA-binding domain 106 157 IPR011598 GO:0046983
Spst8g01820 334 MobiDBLite consensus disorder prediction 56 85 - -
Spst8g01820 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 177 IPR036638 GO:0046983
Spst8g01820 334 CDD bHLH_AtFAMA_like 109 179 - -
Spst8g01820 334 PANTHER TRANSCRIPTION FACTOR FAMA 29 333 IPR044283 GO:0003700|GO:0010052
Spst8g01820 334 Gene3D - 102 170 IPR036638 GO:0046983
Spst8g01820 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Spst8g01820 334 SMART finulus 111 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01820 Spst-Chr8 22021830 22024363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01820 16 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 49.858 4.46e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g01820 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01820 K20558 - gmx:100809717 494.967