Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01808 ATGAGTTCTGCACAACAAGAGAAGTTTGTTAGGTTTCGGGATTGGAATTCGGAGAAGGGTTCTGAGAGCAATTACCCTGCGGTTAAAACTGTAAGCTCAGGGATATTTAGAACTACAATAAGTTCAGTTTCTGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGAGAGGATAAAAAGATTCAGGACATCATTCAAATCTTTTCCCTATAGTTGTGCTCTTTCTAGAGGCTTTAGTTCTAGAAAGAAAATCCTTGATCCACAGGGTCCATTCCTTCAAAGGTGGAACAAGATTTTTGTATTATTATGTGTTATTGCAGTATCACTAGATCCTTTGTTCTTTTATGTCCCGGTTATTGATGATGAGAAGAAATGTCTTTCACTGGACAGCAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAATCCACATGATTTTCCAATTTCATACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGGGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCAACATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTAATTCTTGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAATTTACTGAAATTTGTTGTCTTCTTCCAATATGTGCCTCGTTTATTGCGAGTCATTCCATTATATCGAGAAGTTACAAGGACCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCCGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTATTTGTTTTCCATAGAACGAGAAACCACATGTTGGCAAGAAGCCTGTCGAAGTAATACTACAGTGTGTAACAAGGCAGATATGTATTGTAATGATTATTGGGGTGGGTTTAGCAAAATTTCGACATTCCTGAATAATTCTTGCCCAATTCAGAACGAAGATAAAAAGCTCTTTGATTTTGGAATGTTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAGTTCTTTTACTGCTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCTATGTTTGGGAAATATGTTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACATATCTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAGAGGAGGGATGCAGAGCAGTGGATGTCTCACCGATTACTTCCTGACGGCCTGCGAGAGCGAATCAGACGATATGAACAGTACAGATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGATTCGTAATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGTTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGATCAACTTCTGGATGCAATGTGTGACCGTCTGAAGCCAGTGCTTTTCACTGAAGAAAGCTACATCGTTCGGGAAGGAGACCCAGTTGACGAGATGCTCTTCATAATGCGTGGGAAGCTATTGACCATCACAACTAACGGTGGAAGAACGGGGTTCTTCAACTCTGAGTATCTCAAGGCTGGTGATTTCTGTGGGGAGGAGCTTCTCACATGGGCCTTGGATCCCCATTCCTCATCCAACCTTCCCACTTCAACCAGGACTGTCCAAACTCTTTCAGAAGTTGAAGCCTTCGCCCTCAAAGCTGATGACTTGAAGTTTGTGGCATCACAGTTTCGGCGCCTTCACAGTAAGCAGCTCCGCCACACTTTCAGGTTCTACTCCCAACAATGGCGCACGTGGGCTGCGTGTTTCATTCAAGCTGCATGGCGGCGCTACAGCAAGAGGAAGCTTGAAGAATCCCTCGTTGAAGAGGAGAATAGACTGCAAAGTGCATTGGCTAAAGCAGGTGGGAGCTCACCTAGCCTTGGTGCCACCATATATGCTTCTAGATTTGCTGCTAATGCTCTTAGATTGCTTCGCCGTAATAGCACAAAGAAGGGTAGGGTGGCAGAGAGATTACCACCCATGCTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGAGGAATAG 2157 0.4237 MSSAQQEKFVRFRDWNSEKGSESNYPAVKTVSSGIFRTTISSVSEKFQNGLESGSERIKRFRTSFKSFPYSCALSRGFSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDSKMEITATVLRSFSDAFYIIHMIFQFHTGFIAPSSRVFGRGVLVEDSWAIARRYLSTYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRVIPLYREVTRTSGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNTTVCNKADMYCNDYWGGFSKISTFLNNSCPIQNEDKKLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTYVWEICFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRERIRRYEQYRWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDDQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLVEEENRLQSALAKAGGSSPSLGATIYASRFAANALRLLRRNSTKKGRVAERLPPMLLQKPAEPDFTADEE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01808 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 75 713 - -
Spst8g01808 718 Gene3D Jelly Rolls 487 607 IPR014710 -
Spst8g01808 718 Gene3D Helix hairpin bin 415 480 - -
Spst8g01808 718 Coils Coil 641 661 - -
Spst8g01808 718 FunFam Cyclic nucleotide-gated ion channel 1 487 605 - -
Spst8g01808 718 Pfam Cyclic nucleotide-binding domain 510 600 IPR000595 -
Spst8g01808 718 SMART cnmp_10 489 620 IPR000595 -
Spst8g01808 718 Pfam Ion transport protein 94 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst8g01808 718 CDD CAP_ED 489 620 IPR000595 -
Spst8g01808 718 FunFam Cyclic nucleotide-gated ion channel 1 416 480 - -
Spst8g01808 718 Gene3D - 96 413 - -
Spst8g01808 718 SUPERFAMILY Voltage-gated potassium channels 86 411 - -
Spst8g01808 718 SUPERFAMILY cAMP-binding domain-like 418 611 IPR018490 -
Spst8g01808 718 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01808 Spst-Chr8 21870998 21876076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01808 5 717 Ion Channels AT5G53130 78.352 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01808 K05391 - gmx:100801032 1334.7