Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01807 ATGTTTCTTTCCTTTTACCATAAGATTTTGAGTTCAATTAATAATGGACTTTTAATTCCTCTCTTTTTGTTTTTATTAATTTTGGAAATATTTAAGGGTATTGGAGGAATTAAACCTATGGAAGGTTCAAAACCTCCTATGTTGGAGAAAAGGGCAAGGCCACAGAAAGATCAAGCTTTGAACCCAAGGTGCAATTCAACAAACACTAAATTCTGCTATTACAATAACTATAGCCTCTCCCAACCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAGGGAGGTTCTCTGAGAAATGTTCCAGTGGGAGGAAGCCCAAGAAAGAACAAGAGACCAACATCTGCATCTTCATCACCAGCTCCATCATCAACTAAGAAGTTTCCTGATCTGACAACACAGCCCAATTTCCCTCAGTCTTCTTCTCGAAACCCAAAGATCCATCAAGGCCAAGATCTTAACTTGGCATATCCTCCAGTTGAGGAATCTAGATTCATTGATGTTCCATACAACACTGAAGACAACAACAAGAAGGCTGAAACCCCTCCTCAACCCAACCTTCAAAATCCCACTTCTTCTTACTTTTCAGCAATGGAGCTTCTCAAAACTGGGATTGGTTCATCAAAGGGCTTAACCTCTTTCATGCCCACGTCGGTTTCAGATTCCAGCACAATGTATAGCTCAACCGGGTTTCCTTTGCTAGACTTCAAACCTGGGCTTAACTTCAGCGTAGCGGGGTTTGACAATGGTTATGATGATAGTTTCCAAGGGATTCAAGATGGTGAAGGGGCAAGGATCTTGTTTCCTGTTGAAGATTTGAAGTCACAGACGGTGACAAAGAGTGCTGAGTTAGGGCCAAAAAGAAGTCAAGGGGATTTAACTGGGTACTGGAATGGCATGCTTAGTGGAGGATCATGGTAG 924 0.4167 MFLSFYHKILSSINNGLLIPLFLFLLILEIFKGIGGIKPMEGSKPPMLEKRARPQKDQALNPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGSPRKNKRPTSASSSPAPSSTKKFPDLTTQPNFPQSSSRNPKIHQGQDLNLAYPPVEESRFIDVPYNTEDNNKKAETPPQPNLQNPTSSYFSAMELLKTGIGSSKGLTSFMPTSVSDSSTMYSSTGFPLLDFKPGLNFSVAGFDNGYDDSFQGIQDGEGARILFPVEDLKSQTVTKSAELGPKRSQGDLTGYWNGMLSGGSW 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01807 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 196 IPR045174 GO:0003700|GO:0006355
Spst8g01807 307 MobiDBLite consensus disorder prediction 100 153 - -
Spst8g01807 307 MobiDBLite consensus disorder prediction 111 150 - -
Spst8g01807 307 Pfam Dof domain, zinc finger 62 113 IPR003851 GO:0003677|GO:0006355
Spst8g01807 307 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01807 Spst-Chr8 21868489 21869412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01807 47 307 C2C2-Dof Transcription Factor Family AT3G61850 44.718 3.13e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst8g01807 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01807 - - lja:Lj0g3v0363619.1 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01807 8 21868489 21869412 Spst8g01807 8 21868489 21869412 ECH
Spst8g01807 8 21868489 21869412 Spst9g01414 9 14090492 14091403 PCT