Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01798 ATGCGATCCGCTTCGATCTTCTCTACTTCGCTAAGTTCCTGGAATTGGTTGAGATCGGGAAGAGTTTGTTCCTGTGGCTCCTTGGAACGGATTATAATGATTTGGAGAGCCAACATTGAAAAGAGTTGCAATCGAGTAAGAATATGGACGGTGAACGGAGCATACCTGCTCCATCTCATGGGCAAGTTGACGGCGTTCAGAAAGTTAAAGCATTACAGGGCGGAATGTTTCAAGGATAGAACTGATGTGCAATGCCTCCATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAAAAATTATTGAATTGGTGAAAATAAATGGGGCTAAAAAGTGGTCATCTCTTGCACAACATTTACCTGGACGAATTGGTAAGCAGTGTCGTGAAAGTGTATTGCGCTTGGCTGTTTCAGTTGGCATGATTTGTATGGTTGTACTTGTACCTGCGATCCCATCCTGTTGGTGGGGCATTACAGCCAATACTGGGCAATTGGGTCTGAAGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATTTGGGAACAAATGGGCCGAGTTGTCAAAGTACATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGGCATCTGGTGTGCTTAACCAGTTTGAGCCTGTACCTCATGTTGGAAATTCGAATCAATCATCAAGGTTGCAGTGTAGTCGAGATGATAATGACTCCAAGGGGATTGAAGGAGAGGAAGTTTCAGACTGCAGCCAAGGTTCAGCTAATGCTCGCTTTCCATCTGCTATGGGGATGGGCAGTGCTGACTTACAAACTGGAGAGGCTTATAGGCCAAATGAAGAATGTAGTCTTGGAAAGAATCATAGTCCAAGTCGAGCATCTTGTTCAGAGCCATATTACGTATCAATTGATGATGTTAGTATATGCATTCCTGAAATTGCTCACCAAGAGGCATGCACTTCTCAATTCATTGAGAAACAATCACATGAACCTGAAAATTCTCTTAGTGGGGATTGCCATTTCAATTTACATTCCTTGCCCAATATTTCATCGATGATCTTGGGGCAGGGTTCCTTGCAGCAAAGAGATTGTGTAGCTCCTAGTGAAATATGTGAGAAAGTGACTGTTCCATTTCAGACATCAGAGCGGTTGGGTGTTTCAACGTCCATGCGACCTGCATCTTTGGATTCTTATAAACCTGAGCACATGTTGATATCTGATCATGAATGTTGCACCGTTCTGTTTTCAGAGTCAATGAATGATGGGTGTTTTCCTTCTGTAGATTATATTAAAGGTGAAGATACAGCTGAATTTTCCGGATTCACTTCATTTCTTTGCCAATCTTGTAATATCCAGATGTCTGAAACTGCTGGAACCTCAACTCCTCAGCTAACTTGTCCTCGGTGTTCTAATAATTATGAAGGAACTTCATCCTCCTTGTCTGTCCCTCCAGTACTTTCTGCTTGTGATGATAGGATGGGTCCTAGTGCCAATGGCAATCAATTATATGGAACAGAGGGTCACCAGTTTGTCTCCAGAGCACCTGCTCACTTTGCTTATGTCAATGACATGTCCAGTTCTCCTTGTGTGGATGGTGTAGGTACTGCAGTAATGGAAGAACCGCTTGATATTCTGAATTGTACTTCAAAATTGGTCCCTGTAAATAGGGATAATCTAACAGAGGAAAAAACGGATGTGCATACAGAAAAGGAGGACTCAGGATCTCTTTGTTATGAACCCCCCCGTTTTCCTAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGAAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATTCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTCAGGTTGTGGGACTCACCCTCTCGTGATGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACATTTACAGGTACACCATCCATATTAAAGAAAAGACACCGAGACTTGTTGTCACCACTCTCAGATAAAAGAATTGATAAGAAACTGGAGACTGACATGACTACCTTCACCAAAAACATTTCCAGTTTGGATGTCATGTTTGGTGATAATGAGACTCAAGAAGCAGATATGCCTTCATTGCAAAAACAGAACAGCAGGGCATGTGTTGATGATGAGAATAAAGAAAATTGTGGACAAGCTTATAAGCCAAATAAATCTGCAATTTTGGATGAGAATCCCCAAAAAGAGACTGTTGACAATTCTCAGCCTAATGTCAAGCAACAGCAGCTAAAGATTGATCCCTCAGCTGCTGTGATTGAACAACAACCTTCCGGAGTTTTGGTTGAGCATGATGTGAATGACCTGTCGCTATCTTCTCCTGATCAAGTTGGTTTAAAATCAGACAGAGCTCTGGATTCAAGTACTAAAACTCCCAAAAACTTGAACAGTTCTTTGGAAGCCATTCCAAATCAGAACAGTCATTTGAAATTATCTTCTAAAAATCCATGCTCAAGAATTAATTCTAATTCTCCTTGTGTACGTGCAAAGGAGCATGAAAAACTTTCAGTTGCTGTTACTCGTGCACAAACTGCAGGGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCATCCCTGGTGATAGAAGCTATGATGCAATTGGGTTGTTGAAACAGATCAGTGAACAAACTGCTGCCACATATGCCAATGCTCAAGAGATTTTGGGAAATGAAACTCCAAAGGCATTAGGGAAAGATGCATCTGGAAACGACAAGGATACATTGGCTTCAAATGCATTGATAGAGCGACGCACACTTGACTTTAGTGAATGTGGAACACCAAGCAAGGGTGATGACAACAAATCCTCAGCTATAAGTTTCTCAAGCCCTTCTTCGTATCTGTTGAAAGAAGTTGCGCGACCAAACATGGCTGCTCTCTCATTCCTTCCACAAACCTGCCACTCTCTTTCCTTTCCGCGACATGGCCCCCGCTTCCACCGCCACTTCCCCACCGCTCTCGCTGGTTCCCACCAACCTGGAGGCTCGGTTGATTCTAAAACTCAAGTGTATCGTGTTCCGCTTTTGACTTCCTCGGAGGCCAATGCAAGGCTAAAATCATTTAGAGAAAAGATAAAGGGCAAGCAACAATTCCTTGCCATGTATTCTAGTATTTTTGATGGGATAACAACAGATCCAGCATCTATGGTTATTCCTATGGATGACCACATGGTCCATAGGGGCCACGGTGTGTTTGATACTGCTGCAATAATGGACGGATACCTATATGAGCTAGATCAACACCTTGATCGCTTTTTAAGCTCTGCATCCATGTCTAAAATCGATCCCCCTTTTGATCGTGGAAGCATAAGGAGAATACTCATACAAACTGTAAGCGCTTCCAAGTGTAGGAAAGGATCACTAAGATATTGGCTCTCAGCAGGACCTGGTGACTTTCAGTTATCTCCCACTGGTTGCCACCAATCAAGTCTGTATGCAATAGTAATACAGGATCTGTCACCATCATCGCTTGATATCAGGGGAGTTAAAGTCGTTACTTCATCTGTCCCCATTAAACACCCCAAGTTTGCTATTACTAAGAGTGTGAATTATCTTCCAAATGTACTCTCAAAGGTGGAAGCTGAAGAAGCTGGTGCTTTTGTAGGCATTTGGCTTGATTTTGAAGGTTTTGTTGCAGAAGGGCCTAATATGAATGTGGCCTTTGTCACTAAAGAGAAGGAACTAATAATGCCTCACTTTGACAAAATTCTAAGTGGCTGCACAGCTAGGAGAGTGTTAACCCTTGCCGAGAGTTTATTAAGGGAGGGTAAGCTTAAGGGGATAAGGATGAAAAATGTGACTGTTAAGGAAGGTAAGAAAGCAGATGAAATGATGCTTCTTGGGAGTGGAATTCTTGTTTGCCCTGTAGTGCAGTGGGATGAGCAGGTTATTGGTAATGGCAAAGAAGGCCCTGTAACACAGGCTCTTTTCAATCTAATTGTTGATGACATGAAATCAGGACCCTCTACTGTTCGTACACCTGTTCCATATTGA 4146 0.4214 MRSASIFSTSLSSWNWLRSGRVCSCGSLERIIMIWRANIEKSCNRVRIWTVNGAYLLHLMGKLTAFRKLKHYRAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEKIIELVKINGAKKWSSLAQHLPGRIGKQCRESVLRLAVSVGMICMVVLVPAIPSCWWGITANTGQLGLKWVNHLDPTIKKEAWTQEEELALIHYHQIFGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLASGVLNQFEPVPHVGNSNQSSRLQCSRDDNDSKGIEGEEVSDCSQGSANARFPSAMGMGSADLQTGEAYRPNEECSLGKNHSPSRASCSEPYYVSIDDVSICIPEIAHQEACTSQFIEKQSHEPENSLSGDCHFNLHSLPNISSMILGQGSLQQRDCVAPSEICEKVTVPFQTSERLGVSTSMRPASLDSYKPEHMLISDHECCTVLFSESMNDGCFPSVDYIKGEDTAEFSGFTSFLCQSCNIQMSETAGTSTPQLTCPRCSNNYEGTSSSLSVPPVLSACDDRMGPSANGNQLYGTEGHQFVSRAPAHFAYVNDMSSSPCVDGVGTAVMEEPLDILNCTSKLVPVNRDNLTEEKTDVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLETDMTTFTKNISSLDVMFGDNETQEADMPSLQKQNSRACVDDENKENCGQAYKPNKSAILDENPQKETVDNSQPNVKQQQLKIDPSAAVIEQQPSGVLVEHDVNDLSLSSPDQVGLKSDRALDSSTKTPKNLNSSLEAIPNQNSHLKLSSKNPCSRINSNSPCVRAKEHEKLSVAVTRAQTAGDNSGEQTRKDGGFETCSIPGDRSYDAIGLLKQISEQTAATYANAQEILGNETPKALGKDASGNDKDTLASNALIERRTLDFSECGTPSKGDDNKSSAISFSSPSSYLLKEVARPNMAALSFLPQTCHSLSFPRHGPRFHRHFPTALAGSHQPGGSVDSKTQVYRVPLLTSSEANARLKSFREKIKGKQQFLAMYSSIFDGITTDPASMVIPMDDHMVHRGHGVFDTAAIMDGYLYELDQHLDRFLSSASMSKIDPPFDRGSIRRILIQTVSASKCRKGSLRYWLSAGPGDFQLSPTGCHQSSLYAIVIQDLSPSSLDIRGVKVVTSSVPIKHPKFAITKSVNYLPNVLSKVEAEEAGAFVGIWLDFEGFVAEGPNMNVAFVTKEKELIMPHFDKILSGCTARRVLTLAESLLREGKLKGIRMKNVTVKEGKKADEMMLLGSGILVCPVVQWDEQVIGNGKEGPVTQALFNLIVDDMKSGPSTVRTPVPY 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01798 1381 MobiDBLite consensus disorder prediction 252 289 - -
Spst8g01798 1381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Spst8g01798 1381 Gene3D - 1064 1201 IPR043131 -
Spst8g01798 1381 MobiDBLite consensus disorder prediction 817 843 - -
Spst8g01798 1381 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Spst8g01798 1381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 139 IPR017930 -
Spst8g01798 1381 FunFam Transcription factor MYB3R-2 189 251 - -
Spst8g01798 1381 FunFam Transcriptional activator Myb isoform A 98 140 - -
Spst8g01798 1381 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 1090 1369 IPR036038 GO:0003824
Spst8g01798 1381 FunFam D-amino-acid transaminase, chloroplastic 1061 1200 - -
Spst8g01798 1381 SUPERFAMILY Homeodomain-like 173 238 IPR009057 -
Spst8g01798 1381 Pfam Amino-transferase class IV 1114 1342 IPR001544 GO:0003824
Spst8g01798 1381 SUPERFAMILY Homeodomain-like 74 139 IPR009057 -
Spst8g01798 1381 CDD PLPDE_IV 1106 1364 - -
Spst8g01798 1381 MobiDBLite consensus disorder prediction 888 908 - -
Spst8g01798 1381 ProSiteProfiles Myb-like domain profile. 94 145 IPR001005 -
Spst8g01798 1381 CDD SANT 190 230 IPR001005 -
Spst8g01798 1381 Gene3D - 1204 1375 IPR043132 -
Spst8g01798 1381 Gene3D - 189 248 - -
Spst8g01798 1381 FunFam D-alanine aminotransferase 1204 1371 - -
Spst8g01798 1381 Pfam Myb-like DNA-binding domain 188 230 IPR001005 -
Spst8g01798 1381 Pfam Myb-like DNA-binding domain 99 139 IPR001005 -
Spst8g01798 1381 Gene3D - 96 188 - -
Spst8g01798 1381 PANTHER AMINO-ACID AMINOTRANSFERASE 1062 1373 - -
Spst8g01798 1381 MobiDBLite consensus disorder prediction 252 266 - -
Spst8g01798 1381 CDD SANT 101 139 IPR001005 -
Spst8g01798 1381 SMART sant 98 147 IPR001005 -
Spst8g01798 1381 SMART sant 187 235 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01798 Spst-Chr8 21734616 21750367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01798 74 982 MYB Transcription Factor Family AT4G32730 37.513 1.69e-159 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g01798 Aminotran_4 5.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01798 - K09420 gmx:100794559 1365.9