Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01769 ATGGACAAAATGTTTGATATGGAAATTAAAGACAAGGAAATTGTTAGCAAAGAGAGTAAAGATATTGAAATGGAAGAGACTCGTGAGAAGAAGGAGGAAACCCTACCACCAGGATTTCGGTTTCACCCCACCGACGAAGAACTCATCTCTTACTATCTCACAAACAAGATTTCAGATCCTAATTTTACAGGAAAAGCAATAGCTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTTCCGGGGAAGGCGAAGATGGGGCAAAAAGAATGGTACTTCTTCAACCTAAGAGATCGTAAATATCCGACAGGTGTGAGAACCAACAGAGCAACAAACACAGGGTACTGGAAAACCACTGGGAAAGACAAGGAGATCCTCAACAGTGTTACATCGGAGTTGGTTGGTATGAAGAAAACTCTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAAAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAATCCACCTTCAAGATCAATAAGAACATTTGGGTGAAGCAAGATGAATGGGTGGTTTGCCGGGTATTTCGCAAGAGTGCTGGTGCAAAAAAGTTCCCCTCGAATTCCAACCACACCAGAGCAGTGAATCCTTATAGTCTGGAGGTTGGCCCTAGCATTGTGCCACCCCCAATGATGCACCTGGGAGATCCTTCTGCTAATTTAAATTTCCTTTATGGATCAAGAAACTACATGATGAGCCATTCAGAGGTAGCTGAAATGACAAGGGTCTTGAGGGGTGGTGGATCCACAAGTGTGAATGTGATGAACATGAACCTGCCAATAATGCACCCCTATTTGAACAATCCAGCAGCAGCAACAGCAGGAGGAGGGTTCACCATTTCTGGCCTTAATTTGAACCTGGGAGGAGAAACAGTTTCTACTGCTACCACCACGCCAACACAACCCCTTTTGAGGCCAATGATGCCACCACCACAGCCACCTTCTGCTCACACAGTTGCCCAAGTGCATCATGATTTCAGTTCCAACATGGTGACACCCAGTGCTCTTGCTGCTGACAATGTAGGGTATGGTGCAGACATGAGCAGTTCAAATTCTCATGGCAATAGGTACATGGGCATGGACCACTGCATGGATCTAGACAATTACTGGACATCCTACTAA 1155 0.4502 MDKMFDMEIKDKEIVSKESKDIEMEETREKKEETLPPGFRFHPTDEELISYYLTNKISDPNFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKINKNIWVKQDEWVVCRVFRKSAGAKKFPSNSNHTRAVNPYSLEVGPSIVPPPMMHLGDPSANLNFLYGSRNYMMSHSEVAEMTRVLRGGGSTSVNVMNMNLPIMHPYLNNPAAATAGGGFTISGLNLNLGGETVSTATTTPTQPLLRPMMPPPQPPSAHTVAQVHHDFSSNMVTPSALAADNVGYGADMSSSNSHGNRYMGMDHCMDLDNYWTSY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01769 384 ProSiteProfiles NAC domain profile. 35 189 IPR003441 GO:0003677|GO:0006355
Spst8g01769 384 Gene3D NAC domain 44 193 IPR036093 GO:0003677|GO:0006355
Spst8g01769 384 FunFam NAC domain-containing protein 100-like 44 193 - -
Spst8g01769 384 MobiDBLite consensus disorder prediction 16 39 - -
Spst8g01769 384 Pfam No apical meristem (NAM) protein 36 162 IPR003441 GO:0003677|GO:0006355
Spst8g01769 384 SUPERFAMILY NAC domain 32 189 IPR036093 GO:0003677|GO:0006355
Spst8g01769 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 32 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01769 Spst-Chr8 21278970 21283762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01769 26 384 NAC Transcription Factor Family AT2G24430 49.340 6.30e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst8g01769 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01769 - - gmx:100811175 591.652