Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01742 ATGACCGTTTTACCTTCTTGCTCCCGCTGCGCACAATCAGTAGTTACCTTTCTGGCCACCATCCTTCTGCTATTCCAACAAACTTGCAATGCAAAGCATCACCCAATCTGTTCCCCTTCTTCGTGTGGAAAAATTCGCAATATAACATATCCATTTCGACTGAAAACCGATCCACATGGTTGTGGCCTTTCAAGTTACGAATTAGACTGCGTGAACAACTTGACAGTGTTAAATCTGTTTCCAGAGAAATTCTATGTGCAGGATATCGATTACAAGGGACGTCAGATCCGATTGACTGATGCGGGTATTGTGGAGGACACTGTTTGCTCCCTTCCTCGTTATTTCTTATCTTCGTCAAATTTCACTTCATTTGGTACTGGTTTTAAATCTTTCGTAATGGATCCGCCAACTTTTTCGTATTCAAGAATTCCTCCATTTGTAGTGTTTCTAAACTGTAGTAATCGAGTGAGTGATGATCCTCGATATGTGGAAGTGAATGGCGGTCGTTGCGATTCGGGAGGCTATATCTATGTTGTTTTGGATTCCAACGAGCCATTTAGACTGATGGGCATCCAGGTTGGGTGTCGTTTGAAGACTGCTACCTGTGCAAACTTTAACTACAGCAGAAACGTTATCCATACAAACCAGACAAATGACAGAAACGTTTCCTATTCTGATATCCTCAAATTGCTGGAAGACGGATTTTGGTTGTCTTGGTTACCACTTATTTGTAGGGATCAATGCGGAATAGGAACGGACATTTGCTCCATCAATAAAACCACGCAACAAATTCAATGTGGACAACGGGGACGCTGCCATATCTTGGGCTCGGATTCGGACCATTGTGGAACTCTGGCACGAATGGTTGCTGAAACACTACGTTATTTCAGAGTCATTATAATAGGATTTTCTCAAAGAATAAAAGATGTCAAGCGATCACTCGCGCTGTCAGACTCATATGGCACTGGAGCTGATCTTATAGGTCAAGATGTTATACCAATATTAATTGTAGTTAGATATCTACTTGGAGTCACCCTTTTGCTTGGTCTACTTATCTATATGTGGCGACGAAGACATTTCTCAATGTATGAAAATATTGAAAACTTTTTGTTAGACAACAATCTAAATCCTATTAGGTATGGATACAAAGAAATCAAGAAAATGACCAAAGGTTTCACAGTGAAATTGGGTCAGGGAGGCTTTGGTGCTGTATATAAAGGAAAACTCGGAAGTGGGTTGGATGTAGCAGTAAAGATGTTGAGCAAATCGAATGATAATGGTCAAGATTTTATCAATGAAGTAGCTACCATTGGAACCATACATCATGTAAATGTGGTGCGTCTTATTGGATATTGTGTTGATAGAAAAAAGCGTGCTCTAGTTTATGAATATATGCCTAATGGGTCATTGGATAAATATATTTTCTCCAGTGAAAAGGGCACCCTTTTAAGCTATGAGAAAATATATGAAATATCTCTTGGTATAGCTGATGGGATTGCATATTTGCATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCACAATATTCTTTTAGATGCCAACTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTACATGCAGTAAATGATGGCGTTGTCAACATGACTGCAGCAAGAGGAACATTGGGTTATATGGCTCCCGAGTTGTTTTACAAAAATATGGGTGGCGTAACTTATAAAGCTGATGTATATAGTTTTGGAATGCTTTTAATGGAAATGGCAAGTAGGAGGAGGAACTCAAATCCTCATGCAGAACATTCAAGTCAGCATTATTTTCCCTTTTGGATTTATGATCAATTTAAAGAAGAGAAAAATATTAATATAGAAGATGCTTCAGAAGAGGACAATATTCTAGCTAAAAAGATGTTTTTGGTTGCCCTATGGTGTATTCAGTTAAATCCAACTGATCGTCCTTCAATGAATAAGGTAATGGAAATGCTTGAAGGGAAGATTGAAAACCTTGAATTGCCTCCAAGGCCTTCCTTTTATAAAAATGAATCATACAGACATGATGATGTTATCTCTGACCAAGCATCATCCACTAATTCCTCTTATTCTGATAGGTAG 2106 0.3865 MTVLPSCSRCAQSVVTFLATILLLFQQTCNAKHHPICSPSSCGKIRNITYPFRLKTDPHGCGLSSYELDCVNNLTVLNLFPEKFYVQDIDYKGRQIRLTDAGIVEDTVCSLPRYFLSSSNFTSFGTGFKSFVMDPPTFSYSRIPPFVVFLNCSNRVSDDPRYVEVNGGRCDSGGYIYVVLDSNEPFRLMGIQVGCRLKTATCANFNYSRNVIHTNQTNDRNVSYSDILKLLEDGFWLSWLPLICRDQCGIGTDICSINKTTQQIQCGQRGRCHILGSDSDHCGTLARMVAETLRYFRVIIIGFSQRIKDVKRSLALSDSYGTGADLIGQDVIPILIVVRYLLGVTLLLGLLIYMWRRRHFSMYENIENFLLDNNLNPIRYGYKEIKKMTKGFTVKLGQGGFGAVYKGKLGSGLDVAVKMLSKSNDNGQDFINEVATIGTIHHVNVVRLIGYCVDRKKRALVYEYMPNGSLDKYIFSSEKGTLLSYEKIYEISLGIADGIAYLHQGCDMQILHFDIKPHNILLDANFVPKVSDFGLAKLHAVNDGVVNMTAARGTLGYMAPELFYKNMGGVTYKADVYSFGMLLMEMASRRRNSNPHAEHSSQHYFPFWIYDQFKEEKNINIEDASEEDNILAKKMFLVALWCIQLNPTDRPSMNKVMEMLEGKIENLELPPRPSFYKNESYRHDDVISDQASSTNSSYSDR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01742 701 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Spst8g01742 701 FunFam serine/threonine-protein kinase PBS1-like 361 464 - -
Spst8g01742 701 MobiDBLite consensus disorder prediction 687 701 - -
Spst8g01742 701 CDD STKc_IRAK 396 662 - -
Spst8g01742 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Spst8g01742 701 Pfam Protein kinase domain 394 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01742 701 PANTHER RUST RESISTANCE KINASE LR10-RELATED 363 679 IPR045874 GO:0004672
Spst8g01742 701 MobiDBLite consensus disorder prediction 680 701 - -
Spst8g01742 701 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Spst8g01742 701 ProSiteProfiles Protein kinase domain profile. 390 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01742 701 Gene3D Phosphorylase Kinase; domain 1 368 464 - -
Spst8g01742 701 SUPERFAMILY Protein kinase-like (PK-like) 376 661 IPR011009 -
Spst8g01742 701 Gene3D Transferase(Phosphotransferase) domain 1 465 675 - -
Spst8g01742 701 SMART serkin_6 390 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01742 701 FunFam PR5-like receptor kinase 465 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01742 Spst-Chr8 20886105 20889310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01742 37 676 Receptor kinase-like Gene Family AT5G38260 34.198 6.43e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Spst8g01742 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01742 - - gmx:100820366 880.167