Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01731 ATGCCAGGCACAACATGTGAAGTGATGCAAAACGGCAACCGCAATTGTTTCGCCAGAAAAGGAAGCAGTTGGTTCTCGTCTGTGAAGAAAGTTTTCAGGTCATCTTCTAAAGACTTGCCAGAGCCCGAGAAGAAGGTCAAGAACACACAGAAATTACAGCATGAAGTGGCAGAGGTGGTGTCTTTTGAGCATTTTCCAGTGGAGAGTTCTCCGGATAATAATGTGACAAATGAAGAGAGTGGCACTTCAACGCCGGTTACACAAGATCGAAGCCACGCCATTGCCGTTGCAGCAGCCACTGCCGCAGCCGCTGAAGCTGCCGTGGCGGCTGCTCAAGCAGCTGCAAGAGTGGTGAGATTGGCAGGTTATGGACGCCACTCCAAGGAAGAAAGAGCTGCAATACTCATTCAATCATACTACAGAGGCTATCTAGCTCGACGTGCACTGCGAGCATTGAAGGGATTAGTGAGGCTGCAAGCACTAGTGAGGGGACACAATGTGCGGAAGCAAGCGCAAATGACGATGAGGTGCATGCAAGCACTGGTGAGGGTGCAGGCCCGAGTAAGGGCTCGCCGACTCCAATTGAGTCACGTCGAGGAGCAAAGACAACATTATGAGAAGATCGAAGAGCCCAAGCCCAAGCCCATGAGCCCAATGAGAAAGACAGACATTAATAATGGCTGGGACAATCGGCGTCAAAGTAGCTACAAGATTAAGGAAAACGATTTGAGGAAACATGAAGCTGCAATGAAGAGGGAGAGAGCTCTTGCATACGCTTTCAATTATCAACAGCAACAGCAAAAGCAAATTTTGGTGGCTGAATCGAAGGGTAAGGATGATGTCGGAATAACGTACGAGCGTGAAAAAGGGCAATGGGGTTGGAACTGGTTGGAGCGTTGGATGCAATCGCAACCATACAATGTGAGGAACATGGGGCCGCGTGAGGCCTCTTACATGACTCTCGCTTCTACAACATCAACCACCACAGATAACATGTCTGAGAAGACCGTGGAAATGGACATGATTGCAACTCCAGGCCCAACCAACGTCAGAAGCATCAGCAGCCCAATAAACCAAGACTTTGTTGATTCAAGCCCACTTTCCAATAGGCACCATCATCACATACCTTCCAGCCCAAATAGACGCTATATGGCCCCAACTCAGTCTGCAAAGGCGAAGGTTCGGGGTCAAGGCCCATCGAAGCCTCGGGTTTCAGCTGGGACTCATTGGAACTCCTCGGCCAAGGCAAGCTCAACCTGTGACTCGTCTAGCTCTGGTGGAGGAATCGCTGCTTACCAAATTCCAAGAAGTCCAAGCCCAAAAATTAATGGCACTCGTTCACAGTCTAGAAGGATTGTGGGTAGCAGTCCAGATTACATTGAGGATTGGGCCCTTCCTCTCGGAGCCCATGGTTGGGCTTAA 1422 0.4986 MPGTTCEVMQNGNRNCFARKGSSWFSSVKKVFRSSSKDLPEPEKKVKNTQKLQHEVAEVVSFEHFPVESSPDNNVTNEESGTSTPVTQDRSHAIAVAAATAAAAEAAVAAAQAAARVVRLAGYGRHSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHVEEQRQHYEKIEEPKPKPMSPMRKTDINNGWDNRRQSSYKIKENDLRKHEAAMKRERALAYAFNYQQQQQKQILVAESKGKDDVGITYEREKGQWGWNWLERWMQSQPYNVRNMGPREASYMTLASTTSTTTDNMSEKTVEMDMIATPGPTNVRSISSPINQDFVDSSPLSNRHHHHIPSSPNRRYMAPTQSAKAKVRGQGPSKPRVSAGTHWNSSAKASSTCDSSSSGGGIAAYQIPRSPSPKINGTRSQSRRIVGSSPDYIEDWALPLGAHGWA 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01731 473 SMART iq_5 151 172 IPR000048 GO:0005515
Spst8g01731 473 SMART iq_5 128 150 IPR000048 GO:0005515
Spst8g01731 473 Gene3D - 126 178 - -
Spst8g01731 473 MobiDBLite consensus disorder prediction 204 230 - -
Spst8g01731 473 Coils Coil 236 256 - -
Spst8g01731 473 MobiDBLite consensus disorder prediction 364 453 - -
Spst8g01731 473 MobiDBLite consensus disorder prediction 404 430 - -
Spst8g01731 473 MobiDBLite consensus disorder prediction 438 453 - -
Spst8g01731 473 ProSiteProfiles IQ motif profile. 153 180 IPR000048 GO:0005515
Spst8g01731 473 Pfam IQ calmodulin-binding motif 130 150 IPR000048 GO:0005515
Spst8g01731 473 Pfam IQ calmodulin-binding motif 156 171 IPR000048 GO:0005515
Spst8g01731 473 ProSiteProfiles IQ motif profile. 129 157 IPR000048 GO:0005515
Spst8g01731 473 PANTHER IQ-DOMAIN 5-RELATED 21 423 - -
Spst8g01731 473 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01731 Spst-Chr8 20781027 20784843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01731 17 441 IQD Protein Family AT3G49260 47.109 2.65e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01731 - - gmx:100798026 612.453