Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01715 ATGGTTCTTTCCTTCAATTCTGATGTTCAAGCACAATACAATGAGACAGATACCACTCCAGATTTCCCTCAACCTGTTCATGCAAGCAAGCTGGTTGTAATAGTGACCCTCTCAATATTGTTCACTGCATCATTTCTCTTACTTGTCTATATAAGGTTCCGGAGAACCATCCCTCTTGAGCTCACCCACAGAAGTAGCCACCATTCACCCAATTTTCAAGCACTAACTCGGTCAAGATCAAGGCATTTAGGAATAGACAGACAAGTGATTGAAGCACTCCCATTTTTCAGATTCTCTTTCCTTAAGGGGTCCAAACAAGGCCTAGAGTGCACGGTTTGTTTGTCACAGTTTGAGGACGCCGAGATTCTTAGACTCTTGCCAAAGTGCAAACATGCTTTCCACTTGAATTGCATTGACAAGTGGTTTGAAAGTCACTCTACTTGCCCTCTTTGCAGGAATAATATTGACCCTTTAGACATCAAGAACTTCACCAACTCAATCAGTTCAAGGTCCATAAGAGTTCCTTCAAATTTAACCCAGGACAATAACCTTGAAATCTTCGTTCACAGGGAAACTTCCCATCAAGGGTCGTCGTCGTCGTCATCATCATCATCATCATCAAGGTTTAACCTCGGAAGCAGGTTTTGGAATTTGGGCAGGAGCAACAAAAAAGAACTTCTCGTTGACCAAGAGGTTCATGGAGCAAATGGGACTCACGTGCACAAGTTCAATCACAAAATTGTTGTCTCCGAAGTTGTCAGAAGGAGCAGGTGGAATTATCTTAACTCTTCGGACATGTTATCATTGAACGGTGAGATGATTCATCACATTTCAAGCAGAAGATTCTCTCCATCTGATGAAATGTTTCGTGCAAATTCAAGCATTTCCTCTATTTTCAACGAGGATGAGAGTGCATTTACGTTATTGAATACTGCTGAGAAGAGATCTCTGTCTGATATTGCTCATGTTCCAAGGTTCATAGAAACATGCAAGCAGAATAGAATTGAACCGGGTGTGGCATCAAGTGGGAATAACGACAGGGAAGGGAGCCTGAGAAGGATATGGTTGGCAATTGCTCAACGAACAGTACAATGGTTTGCAGGACAAGAAAGAAACTCAACAGAGTTAGAGCCACAACATTTAGCTTCGAATGTTGGGACAACTTCGTAA 1170 0.4214 MVLSFNSDVQAQYNETDTTPDFPQPVHASKLVVIVTLSILFTASFLLLVYIRFRRTIPLELTHRSSHHSPNFQALTRSRSRHLGIDRQVIEALPFFRFSFLKGSKQGLECTVCLSQFEDAEILRLLPKCKHAFHLNCIDKWFESHSTCPLCRNNIDPLDIKNFTNSISSRSIRVPSNLTQDNNLEIFVHRETSHQGSSSSSSSSSSSRFNLGSRFWNLGRSNKKELLVDQEVHGANGTHVHKFNHKIVVSEVVRRSRWNYLNSSDMLSLNGEMIHHISSRRFSPSDEMFRANSSISSIFNEDESAFTLLNTAEKRSLSDIAHVPRFIETCKQNRIEPGVASSGNNDREGSLRRIWLAIAQRTVQWFAGQERNSTELEPQHLASNVGTTS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01715 389 FunFam RING-H2 finger protein ATL43 85 159 - -
Spst8g01715 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 159 IPR013083 -
Spst8g01715 389 CDD RING-H2_EL5-like 109 152 - -
Spst8g01715 389 SMART ring_2 110 151 IPR001841 -
Spst8g01715 389 Pfam Ring finger domain 109 152 IPR001841 -
Spst8g01715 389 SUPERFAMILY RING/U-box 105 158 - -
Spst8g01715 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 11 371 - -
Spst8g01715 389 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01715 Spst-Chr8 20441196 20442365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01715 19 371 C3H Transcription Factor Family AT2G20030 39.946 1.30e-70 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01715 K10664 - gmx:100803881 563.533