Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01712 ATGTCGGGCCTTGAGATGATGATCCATGCTCGAACATGGCCCATATGTGTCAGCATTAAGCACTGGACCATAGTGCGTGACTCCTGTTTGGTGCCTGAGATTTGGGTGGTGATATTGATGTCAATACCATATTACAACAACTACCAGATTGTGAATTTGGGCTATCACTACATGGAAGATTTGACACAGACAAATACGGGTGTGTATTGGAGACTGATGATGATGGTAGCACATGATGATAATGGAAAGATAGCTGAGTTTAACAGTCAAACACACACGCTAGAACCTCTTACAATGAGAGTTTCGGCTCAGAATGATAACTCTGGGAAGGAGAGTAGCTCCACGTCGTCGTTATCAGCGGCGCCGGGGCCGTCAGAGTCCAAAACGGAGAAGCGCAACCGGGACTCGAACAAGCACCCGGTGTACCGAGGGGTGCGCATGCGGAACTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAATCGCGAATATGGCTGGGCACATTCCCCACACCGGAAATGGCGGCGAGGGCGCACGACGTGGCCGCGCTGAGCATAAAGGGGAACAACGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTTCCTCGTCCGGTGTCGTTAGCCCCTCGCGACGTGCAAGCCGCGGCGGCAAAAGCGGCTCACATGGACTTCCCTCCTTCATCCACGTCATCATCATCATCATCATCATCATCCTTGGTCTCAACAACTTCCTCCTCCTCGTCTCTATCCTCGTTGACTTCAACCGCGGACTTGTCCACTGCGTCGGAGGAACTGAGCGAGATCATCGAGTTGCCGAGGTTGGAAGCGAGTTACGAGCTGGGAAACGAGTTTGTGTACGCAGACTCGCAGGACACGTGGCTGTATCAGCCACCGATACCGTGGTTGCAAGCCACGTACGATGCTTCTCATGGCGATGATGATATTGCAGGGCCAGAGACTGGGCTTGTCACTAGTTTTGAAAGTTTTCTCTGGGATTACTGA 1011 0.5282 MSGLEMMIHARTWPICVSIKHWTIVRDSCLVPEIWVVILMSIPYYNNYQIVNLGYHYMEDLTQTNTGVYWRLMMMVAHDDNGKIAEFNSQTHTLEPLTMRVSAQNDNSGKESSSTSSLSAAPGPSESKTEKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNNAILNFPELAASLPRPVSLAPRDVQAAAAKAAHMDFPPSSTSSSSSSSSSLVSTTSSSSSLSSLTSTADLSTASEELSEIIELPRLEASYELGNEFVYADSQDTWLYQPPIPWLQATYDASHGDDDIAGPETGLVTSFESFLWDY 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01712 336 MobiDBLite consensus disorder prediction 227 256 - -
Spst8g01712 336 Pfam AP2 domain 140 190 IPR001471 GO:0003700|GO:0006355
Spst8g01712 336 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Spst8g01712 336 MobiDBLite consensus disorder prediction 104 142 - -
Spst8g01712 336 FunFam Ethylene-responsive transcription factor 2 140 199 - -
Spst8g01712 336 MobiDBLite consensus disorder prediction 127 142 - -
Spst8g01712 336 Gene3D AP2/ERF domain 141 199 IPR036955 GO:0003700|GO:0006355
Spst8g01712 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 120 284 - -
Spst8g01712 336 SMART rav1_2 141 204 IPR001471 GO:0003700|GO:0006355
Spst8g01712 336 MobiDBLite consensus disorder prediction 104 126 - -
Spst8g01712 336 ProSiteProfiles AP2/ERF domain profile. 141 198 IPR001471 GO:0003700|GO:0006355
Spst8g01712 336 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
Spst8g01712 336 MobiDBLite consensus disorder prediction 221 256 - -
Spst8g01712 336 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Spst8g01712 336 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01712 Spst-Chr8 20405212 20408032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01712 111 314 AP2-EREBP Transcription Factor Family AT5G11590 67.773 1.28e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g01712 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01712 K09286 - gmx:100305349 329.331