Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01707 ATGGAGTCACCCAACTCTTCCCCAATTTTCCCACAATTCACCCTCGACACCAACAAGAACAACAACCCCGACCACTTCATCGTTGAGGACCTCTTGGATTTCTCCAACGACGATGCTGTCATCGCCGACTCCATTTTCGATTCTCTCCCCGTCAACTCCACCGACTCTTCCACCGTAACCGCCGTTGACAGCTGCAACTCCTCCTCCTTCTCCGGCTGCGACCCCCATACCATTCCCGACATTGGTAGCCGGAGTCTCTCCGATGGCCATTTCTCCGGTGACCTATGCGTACCGTATGATGACATAGCGGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGAAGATGCAGCTGATATCAGGCATGAATGCCAAAAACGACGACGTGTCAGAGGCCCGCCGGTTCCACTCCGAGCCCATAAGAAGCGGGATTAACTCTGAGCCCACTAGAAACAACCCCATATTCAATTCGGAAGTGTCGGTTCCGGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCTCCATGCAACTGGACCTCGCGCCTCCTCGTGCTGTCTCCGACGACGTCGTCGTCTTCAGACCCTGAGGTGGTGGTTCCCGTCCCCACTCCTCCCGGGCCGGTCGTGCCAAAAAAACCGGCAAAGGCGACACAGAGGAAGAAGGACAGCGGGGACGGAAGCGGCGGCGACGGGCGCAGGTGCCTGCATTGCGCGACGGACAAGACACCGCAGTGGCGGACGGGGCCTATGGGCCCAAAGACGCTGTGTAACGCGTGCGGCGTGAGGTACAAGTCGGGACGGCTGGTACCGGAGTACAGGCCGGCGGCGAGCCCAACATTCGTTCTGACGAAGCACTCGAACTCGCACCGCAAGGTGCTGGAGCTGCGAAGGCAGAAGGAGATGGTGCGGGCCCAGCAGCACCAGCAACAACAGTTCCTACAGCACCATCATCATAATCATCATCACCATCATCATCATCAGAACATGCTGTTTGACGTATCGAACGGTGAAGATTACTTGATCCACCAACACATGGGCCCCGATTTCCGGCAGCTTATCTAG 1083 0.5734 MESPNSSPIFPQFTLDTNKNNNPDHFIVEDLLDFSNDDAVIADSIFDSLPVNSTDSSTVTAVDSCNSSSFSGCDPHTIPDIGSRSLSDGHFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNAKNDDVSEARRFHSEPIRSGINSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWTSRLLVLSPTTSSSSDPEVVVPVPTPPGPVVPKKPAKATQRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHNHHHHHHHQNMLFDVSNGEDYLIHQHMGPDFRQLI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01707 360 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Spst8g01707 360 MobiDBLite consensus disorder prediction 150 166 - -
Spst8g01707 360 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Spst8g01707 360 PANTHER GATA TRANSCRIPTION FACTOR 18 316 - -
Spst8g01707 360 FunFam GATA transcription factor 231 319 - -
Spst8g01707 360 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Spst8g01707 360 MobiDBLite consensus disorder prediction 222 239 - -
Spst8g01707 360 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 299 - -
Spst8g01707 360 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Spst8g01707 360 MobiDBLite consensus disorder prediction 188 204 - -
Spst8g01707 360 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
Spst8g01707 360 PIRSF Txn_fac_GATA_plant 10 332 IPR016679 GO:0003677|GO:0005634|GO:0045893
Spst8g01707 360 MobiDBLite consensus disorder prediction 145 239 - -
Spst8g01707 360 Gene3D - 234 319 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01707 Spst-Chr8 20302080 20303763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01707 22 360 C2C2-Gata Transcription Factor Family AT4G32890 49.003 6.77e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst8g01707 GATA 3.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01707 - - gmx:100800146 518.464