Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01705 ATGGAGTCTGCTAATACACATAATTTTCCTTATCTAAAGAGTCTCAACCATCATCGCACAATATTTGAACTCTACAACACCATGCTTTCCTCTACCCCAGTAGTCCCCACCCTATTGAATACTCTACTTTTTAGTGTTTTGACAGAGGAAGTCGTTGATATTAACATCTTTCGGTTCTTCAAAGGCTACATGGAAGGTCGTAGCTACAGGAATGGATGGCCAGAAATGCTAAAGCTAAAGGATTGGCCTCCATCAAACTCTTTTGAAGAGTGTTTGCCAAGGCATGGTGCTGAGTTCATAGCTATGCTTCCTTTTAGTGACTATACCCATCCCAAATCTGGTGTTTTAAATCTTGCCACAAAGCTTCCTGCTATTTTGAAGCCAGATTTGGGTCCTAAGACATACATTGGTTATGGCTCTTTGGAAGAACTAAGTAGAGGTGATTCTGTGACAAAACTACATTGTGACATTTCAGATGCGTTGAACCTGTTTTTCAATTGGCAATCTTCATCATTGATTCTTCTGCAAGCTAACCTCACTACTCATGACACTAATCCTTCCTTTGATGCTATGCATTTGAAAAAGGTCGTGGTGGATGCTATAGTACATGCGGTGGTTCAGGACGTGGTCAATATTTTAACACATACAGCTGAAGTAAAGACACCACCATGGCAAACTAAAATCATAAAAAGGTTACAGAAGAAGTATGAAGCCGACGATATGCAGGAGCTCTATGGAAAAGACAGTAAGGCAATTGGTTCACGTGGAAGAAAACATCATCATATAGGTAGTACCAGACATCCAAAATCCTCTGAAAAACGAGACACTTTTGGGAGAGACTCAACCTTACTGGGAAGTCGAGGAAAAGGAGTGAAACCTATTGAACAACAATGTGGACCCCTAAATATGGGACAGTCAGAATCAGATATGGAGGCTTGTGTTCAAGGATTTTCAGAATCTGGCAAAAGTAAATTAAGGTTAAATGCTAGTGAGCCAGTAGTTTTCAATTTGAAGTCAAGTCATCAGGATTTTGATCTCCATAGTCATGATTCCAGTTGCATGTTTATGGAGAAAGATAGTAAGTTCATGCACTATAAAGTTAATAATGTCAAACAGTGTTCATCGTCCAGTGAAGGAATTTCTTTACCAGAACATATGCAGCTTAAGACATGCACCGATGATGATTGTGAAAAAGGAAGAAGCATTTCTGCTATGCATCTAATGGAAGATAAGTTTTGCTCTATCTATGACCAATCTGATACGTGTTCTGTGTTTGTTGATCTTAACCTTAGCACTCCACAAGTCAGGGTAAATCAAGAACATACGAGAAATTATATTGAACAATCCGATTCAAAAAGCAGGTGCATACAATTTGAGAATTTACCCTCCTACTCTGGGAGGAATGTTTCTGATTTACTCTTCACTCGAGCAGTTTTCACACAACTGAATAGGATTGACAATGTTGTTTTGCAAGATGAGACAGATTTAGGTGGTGACTTATCTCTTGATGAATCATATGGACAAGCTCCTGATAATGATATTGGAGGATATCCAAACACCATTGAAGTACAGCCTTGCACTGTAACAGAAGATAATAAATTTGTCAACGGATTGAATTCTTTAAACATGCCATGTTCAGACATTAACATTGACAGAATTTCTGTTAAAAATGGCACAAGCAATGATTTATGTGAAAATGATGATAATTTGGAGACTCAATATGGGAGTGCAGTGTGGGACATATTCCGTAGGCAGGATGTACCCAAGCTAACTGAGTACCTGAAGAAACACCACAGAGAATTTCGCCACATAAATAATCTTCCAGTGATTCACCCCATTCATGATCAGATCCTTTATTTAAATGAGAAGCATAAAAAGCAATTAAAGCAGGAGTTTGGTGTTCAAGCTTGGACATTTGAGCAACACCTCGGGGAGGCTGTTTTCATACCTGCTGGATGCCCACATCAAGTGAGAAACAGAAAGTCTTGCATAAAAGTGGCTCTGGACTTTGTTTCACCTGAGAATGTTCAAGAATGCATTAAATTGACAGAAGAATTTCGGTTACTTCCCAAAGGCCATAGATCTAAGGAAGATAAACTCGAGATAAAGAAGATGGCACTATATGCTGCTGATGTTGCAATAACTGAAGCCACTAAACTGATGAGAGGAAATGAGTAA 2178 0.3889 MESANTHNFPYLKSLNHHRTIFELYNTMLSSTPVVPTLLNTLLFSVLTEEVVDINIFRFFKGYMEGRSYRNGWPEMLKLKDWPPSNSFEECLPRHGAEFIAMLPFSDYTHPKSGVLNLATKLPAILKPDLGPKTYIGYGSLEELSRGDSVTKLHCDISDALNLFFNWQSSSLILLQANLTTHDTNPSFDAMHLKKVVVDAIVHAVVQDVVNILTHTAEVKTPPWQTKIIKRLQKKYEADDMQELYGKDSKAIGSRGRKHHHIGSTRHPKSSEKRDTFGRDSTLLGSRGKGVKPIEQQCGPLNMGQSESDMEACVQGFSESGKSKLRLNASEPVVFNLKSSHQDFDLHSHDSSCMFMEKDSKFMHYKVNNVKQCSSSSEGISLPEHMQLKTCTDDDCEKGRSISAMHLMEDKFCSIYDQSDTCSVFVDLNLSTPQVRVNQEHTRNYIEQSDSKSRCIQFENLPSYSGRNVSDLLFTRAVFTQLNRIDNVVLQDETDLGGDLSLDESYGQAPDNDIGGYPNTIEVQPCTVTEDNKFVNGLNSLNMPCSDINIDRISVKNGTSNDLCENDDNLETQYGSAVWDIFRRQDVPKLTEYLKKHHREFRHINNLPVIHPIHDQILYLNEKHKKQLKQEFGVQAWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVALDFVSPENVQECIKLTEEFRLLPKGHRSKEDKLEIKKMALYAADVAITEATKLMRGNE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01705 725 SMART cupin_9 92 687 IPR003347 -
Spst8g01705 725 Pfam JmjC domain, hydroxylase 571 670 IPR003347 -
Spst8g01705 725 SUPERFAMILY Clavaminate synthase-like 574 715 - -
Spst8g01705 725 ProSiteProfiles JmjC domain profile. 111 687 IPR003347 -
Spst8g01705 725 MobiDBLite consensus disorder prediction 249 295 - -
Spst8g01705 725 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 48 721 IPR045109 GO:0032454|GO:0033169
Spst8g01705 725 Gene3D Cupin 538 696 - -
Spst8g01705 725 Gene3D Cupin 37 192 - -
Spst8g01705 725 MobiDBLite consensus disorder prediction 253 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01705 Spst-Chr8 20269923 20275578 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst8g01705 JmjC 1.5e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01705 K15601 - gsj:114384813 997.653