Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01701 ATGGAGATGGACAGCATTGACTGTGTGTCTTTCTCTGATGGGATGGATGAGGATGAGATCCAACACCACACTATGCATCCTCATCACCACTCTGAGTTTTCTTCAAACAAACCTCGTAATGGCGGTGCTAATAATAATAATGTTTTGGGAGCCACGACCATTTCTCCTGCAACCAGTGTTCATGAGTTGCTAGAATGCCCTGTTTGCACCAATTCAATGTATCCCCCAATTCACCAGACCTGCAACATATTAGACACTCTTATGCTGGACCCCATGGGAAATATGAGTATGGGGCAGAAGTGGAATTTGGATTTAACAATGAAGCCTATGTGGCAAGGACTACTCGAGCTTGATAAGCTCCAAAGAGGTTACGACAAAGATGGGCTTGGGATGATTGCATATAAGTCTGAACATATGAACCTACGTGGGAAGGAAAAAAAAGTAACAAATACTTTCTTGCAGTGCCACAATGGGCATACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCCACATGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAATTACCTTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTAGCACATTTGAGGGATGATCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTCACCGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGATTTATGGGTGACGAGAACGAGGCTCGCAACTACAGTTACAGCCTTGAGGTTGGCGCAAATGGCAGGAAACTTATTTGGGAGGGTACGCCGCGAAGTATTCGCGACAGCCACCGCAAAGTAAGGGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCCTTGTTTTTCTCCGGAGGTGATAAGAAGGAGCTGAAACTAAGAGTTACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGCATACCAAACCTTTGCAGCTAA 1212 0.4455 MEMDSIDCVSFSDGMDEDEIQHHTMHPHHHSEFSSNKPRNGGANNNNVLGATTISPATSVHELLECPVCTNSMYPPIHQTCNILDTLMLDPMGNMSMGQKWNLDLTMKPMWQGLLELDKLQRGYDKDGLGMIAYKSEHMNLRGKEKKVTNTFLQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01701 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Spst8g01701 403 FunFam E3 ubiquitin-protein ligase SINAT3 191 249 - -
Spst8g01701 403 ProSiteProfiles Zinc finger SIAH-type profile. 194 254 IPR013010 GO:0008270
Spst8g01701 403 MobiDBLite consensus disorder prediction 24 48 - -
Spst8g01701 403 SUPERFAMILY TRAF domain-like 194 386 - -
Spst8g01701 403 CDD Sina 255 383 - -
Spst8g01701 403 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 249 382 IPR008974 GO:0005515
Spst8g01701 403 FunFam E3 ubiquitin-protein ligase SINAT5-like 250 382 - -
Spst8g01701 403 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 388 - -
Spst8g01701 403 Pfam Seven in absentia protein family 183 382 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01701 Spst-Chr8 20218821 20232202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01701 154 389 C3H Transcription Factor Family AT2G41980 82.203 9.93e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01701 K04506 - cave:132180687 539.65