Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01682 ATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTGACCGAGAGGGATCTCGAGGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGAAGGCCACCTGGTTATGCTTTTATTGACTTCGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTGGATGGGAAGAATGGTTGGAGAGTGGAGCTTTCCCACAACTCTAGAGGTGGAGGTGGTGGCCGTGGCGGCCGCTCTGGTGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCAGGCCATTTTGCTCGTGAGTGTCGCTTGCGTGGTGGGTCAGGAAGACGCCGTAGTCGTAGCCCACCCCGATTTCGAAGGAGTCCTAGCTATGGACGAAGGAGTTACAGTCCTCGTGGGCGGTCTCCTAGGCGCCGCAGCTTATCACCTCGTGGACGCAGCTACAGCAGGTCACCTCCATATCGTGGACGTGAGGAGGTTCCATATGCTAATGGAAATGGCCTTAGGGAACGTCGCAGAAGCAGAAGTAGTGATCTTTTTAAGGCCCCAGCTCAGCTCTTCTGTATGATTTTCAAAATTGTTGAGGACTGGAGCTGTCTATCTGCTCCTCAATTTCATTGGCTCTCACTGTTTGTGATTTATCGGACTTTTGAGCTTTTTCATGACATGTGA 678 0.5044 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRSSDLFKAPAQLFCMIFKIVEDWSCLSAPQFHWLSLFVIYRTFELFHDM 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01682 225 SMART rrm1_1 3 69 IPR000504 GO:0003723
Spst8g01682 225 CDD RRM_SRSF3_like 3 71 - -
Spst8g01682 225 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Spst8g01682 225 FunFam Serine/arginine-rich splicing factor RSZ22A 86 146 - -
Spst8g01682 225 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Spst8g01682 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Spst8g01682 225 Gene3D - 2 69 IPR012677 -
Spst8g01682 225 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Spst8g01682 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Spst8g01682 225 Gene3D - 84 142 - -
Spst8g01682 225 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 158 - -
Spst8g01682 225 SUPERFAMILY Retrovirus zinc finger-like domains 82 105 IPR036875 GO:0003676|GO:0008270
Spst8g01682 225 MobiDBLite consensus disorder prediction 104 177 - -
Spst8g01682 225 MobiDBLite consensus disorder prediction 66 86 - -
Spst8g01682 225 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Spst8g01682 225 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01682 Spst-Chr8 19876181 19879513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01682 2 59 Eukaryotic Initiation Factors Gene Family AT4G34110 38.095 9.46e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01682 K12896 - gmx:100790689 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01682 8 19876181 19879513 Spst8g01682 8 19876181 19879513 ECH