Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01678 ATGGCTGTGGAACTCATGGGGTTCCCCCAAATCGACGATCAAAAGGCCATCCAAGAGGCTGCATCGGAAGGCCTCAAGGGGATGGAGCACCTGATCCGAGTCCTCTCCCACCAACCCTCTCACTTGAACACCGACCTCACCGACGTTACCGTCTCCAAGTTCAAGAAACTCATCTCCCTCCTCAACCGAACTGGCCACGCCCGGTTCAGACGCGCTCCGGTTCACGCCTCTGAACCGGTTCAATCCCCCGCGCCTCTTCAAACCCTCGCACCGCTTCACAATTCCGCATCCGCACCGGTCCATCTTCCTCCTCCGCAAAACGCGAACCTCTCTCTGCCGGCGCTCTTCGCGTCGCCTGCGCCTGTTCACCACGCGCCGGGGAGCGTCACGCTCGACTTCACCAAGCCGCACAACGCGCTCAGGAGCTCGAAGGCGAAGTCCTTGGAGCTCGAGTTCTCGAAGGAGACATTCAGCGTTTCCTCCAACTCCTCTTTCATGTCCTCAGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGCTTTTCCTCCCGCCGCCGCCCCCTGCAACCTCAGGCGGTAAGCCGCCGGCGTTCAAGAAACGCTGCCTAGAACACCGCGAACACTCCGATGACGTCTCCGGATCCGGCAAGTGCCACTGCGTCAAGCGAAGGAAAAATAGGGTGAAGAAGACTGTGAGAGTGCCGGCGATAAGTTCGAAGATCGCCGATATTCCGCCGGACGAATACTCGTGGAGGAAGTACGGTCAAAAACCGATCAAGGGTTCACCATACCCTAGGGGCTATTACAAGTGCAGCACGGTGAGAGGGTGTCCCGCGAGGAAACACGTGGAGCGTGCACCAGATGATCCGTCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGCGGTTCAGGGCGCGATGCAGGAGAACGCAGCCGGAGTGGTGGGTTTGGTATTCGAGTCAACGCAGAAAGTGGAATAA 987 0.5917 MAVELMGFPQIDDQKAIQEAASEGLKGMEHLIRVLSHQPSHLNTDLTDVTVSKFKKLISLLNRTGHARFRRAPVHASEPVQSPAPLQTLAPLHNSASAPVHLPPPQNANLSLPALFASPAPVHHAPGSVTLDFTKPHNALRSSKAKSLELEFSKETFSVSSNSSFMSSAITGDGSVSNGKLFLPPPPPATSGGKPPAFKKRCLEHREHSDDVSGSGKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPSMLIVTYEGEHRHAVQGAMQENAAGVVGLVFESTQKVE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01678 328 Pfam Plant zinc cluster domain 199 243 IPR018872 -
Spst8g01678 328 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01678 328 SUPERFAMILY WRKY DNA-binding domain 243 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01678 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 307 IPR044810 GO:0003700
Spst8g01678 328 Pfam WRKY DNA -binding domain 247 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01678 328 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01678 328 FunFam WRKY transcription factor 65 229 306 - -
Spst8g01678 328 Gene3D WRKY domain 231 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01678 Spst-Chr8 19619338 19621905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01678 1 323 WRKY Transcription Factor Family AT2G24570 60.933 8.55e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g01678 WRKY 6.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01678 - - pvu:PHAVU_001G060200g 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01678 8 19619338 19621905 Spst8g01678 8 19619338 19621905 ECH