Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01668 ATGGGTGAGTATTCTGGTAGTAGAGGTGTGAATGGGGTGGTAGTCCCTAGAAAGAGGATGAGCCATGCATTTAGAGATACCGCTAATACTAGAGAACGAACAGGTCAAATTTGCAGCAAATTGGGTTGCAGTAGTAGAGCTAATATTCCCGAAGTTGCCCAAGTCAGATCTTCTGAAAAAGGTAAATCTTTGAGGCCTTCATTCCAGTCCTCTTCAAGTAGAAAGGAAACAATTGGAAGTTTCCCTAGATCTACTAGTAACCCAGCAAAACGAATAATGGAACCTCGGAAAAAATTATCCTCTCAGTTTGAGATAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGAATTGCCCGAGCTTATCTCTTCTTCAGTAGCAATTCTGAGAGGGCCTAAATCCAGAGGGGGGAGTTCAGAGTCTAGTAATGTGAGGCTGATGGAAGTAGGAAGCTCCAGTGCATTATCAAATACAAGATCTCAAAGTAATTTGAACCAAAGACCTGGATTGCGTGGACAAGAAACTAAAAGCACTGGTTCAGTGAGACATGCTGTTGCAAGCAAGTATGGAGTGAGGAACATCAGATGCAACAGTATATCTGATGTCATCCCGGCTGCATCAAAAGATTCAAGCCTTAATAGAAGGAAGGATACATCGAAAAAGAGAAACTGTGAAGGGGAAAGTAGTTCCACTGTTCGAGGGAAAATTACCATTGGGTCTTCACTGGAAGGACGGAATTCTGCCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGATCAAGAAATACACCTCACCGGAATACCAGTATGGCACCAGTAAGAACTCAAAGATCAGTTAGTGGTCATGTCAGGGGAAGGTTTTCTAGCCAAGGAAAGGATAACCCTTTGGCAACCAGTGGTGATGGCATTTCATATCGGACATCAGTGGACACTCCTTTAAGTTGCTCAAGCTCTTATGATACATCAGGCAATAGCAGTGAGCAGTTATCTGGTGTCACACCTCTCTCTCCTGCAGAAGAGGACATTACTCATTCTCCAATAAATCGGTATAGCTTTCGACATATAAATATGGGCAGTATTGAAGAGGTATTATTGGCACTTGAGAGGTTTGAACAAGATGCAGATCTAACCCATGAGCAAATTCTTTTGTTCGAGACTGACATTTTCAATAATGGATTGAATTTTTATGATCATCACAGAGACATGCGGTTGGATATTGATGACATGTCCTATGAGGAACTCTTAGCTCTTGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTCAAAGAAGTATATATCAGTCTGAACCTACAAATGATACAGTTGAGGTTACGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGAGATGAAATTGGGGATCTGCCGTGCAAGCATAGATTTCATGTGACTTGCATACAGCAGTGGCTGGGGCTGAAGAACTGGTGCCCTGTTTGTAAATTATCTGCGGCACTGTCGAATAATTCATCTTCACCTCATTGA 1548 0.4218 MGEYSGSRGVNGVVVPRKRMSHAFRDTANTRERTGQICSKLGCSSRANIPEVAQVRSSEKGKSLRPSFQSSSSRKETIGSFPRSTSNPAKRIMEPRKKLSSQFEIDSSETSSVQDEPELPELISSSVAILRGPKSRGGSSESSNVRLMEVGSSSALSNTRSQSNLNQRPGLRGQETKSTGSVRHAVASKYGVRNIRCNSISDVIPAASKDSSLNRRKDTSKKRNCEGESSSTVRGKITIGSSLEGRNSASRNGISISDSRRSRNTPHRNTSMAPVRTQRSVSGHVRGRFSSQGKDNPLATSGDGISYRTSVDTPLSCSSSYDTSGNSSEQLSGVTPLSPAEEDITHSPINRYSFRHINMGSIEEVLLALERFEQDADLTHEQILLFETDIFNNGLNFYDHHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALAESLQRSIYQSEPTNDTVEVTDDIKCCICQEEYVIGDEIGDLPCKHRFHVTCIQQWLGLKNWCPVCKLSAALSNNSSSPH 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01668 515 FunFam E3 ubiquitin-protein ligase arkadia 427 507 - -
Spst8g01668 515 SMART ring_2 461 501 IPR001841 -
Spst8g01668 515 MobiDBLite consensus disorder prediction 209 343 - -
Spst8g01668 515 MobiDBLite consensus disorder prediction 136 183 - -
Spst8g01668 515 MobiDBLite consensus disorder prediction 230 335 - -
Spst8g01668 515 SUPERFAMILY RING/U-box 453 505 - -
Spst8g01668 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 505 IPR045191 GO:0061630
Spst8g01668 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 506 IPR013083 -
Spst8g01668 515 MobiDBLite consensus disorder prediction 104 119 - -
Spst8g01668 515 MobiDBLite consensus disorder prediction 211 229 - -
Spst8g01668 515 MobiDBLite consensus disorder prediction 60 87 - -
Spst8g01668 515 Pfam Ring finger domain 460 502 IPR001841 -
Spst8g01668 515 MobiDBLite consensus disorder prediction 54 183 - -
Spst8g01668 515 ProSiteProfiles Zinc finger RING-type profile. 461 502 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01668 Spst-Chr8 19443577 19446101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01668 362 505 C3H Transcription Factor Family AT2G15530 47.586 1.61e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01668 - - vum:124824270 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01668 8 19443577 19446101 Spst8g01668 8 19443577 19446101 ECH
Spst8g01668 8 19443577 19446101 Spst9g00878 9 7692894 7694222 PCT